Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23r
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8402| Best HMM Match : DUF981 (HMM E-Value=7.3)                     58   5e-09
SB_11421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        29   4.6  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   28   6.0  
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_8402| Best HMM Match : DUF981 (HMM E-Value=7.3)
          Length = 202

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
 Frame = -2

Query: 467 TLTEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTASRLMIAGMAS 288
           T +E + P   +         W   S ++++ + PR  +   G +FSN   RL+++ M  
Sbjct: 63  TPSEGMMPFLPIAAQFLLFTTWVLISPSNVLLNQPRLLLSAIGIVFSNITCRLIVSTMCG 122

Query: 287 QRCELVNWMFWPL--LTGVVTSLYKPEYELSILYALVVFSVLAHVHYGICVV 138
           + CE  N + +PL  +  VV  L     E++ L        + HVHYGICVV
Sbjct: 123 EPCERFNILLYPLAAILFVVPFLKAEGTEVTALVFYTFLVAVLHVHYGICVV 174


>SB_11421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 301 REWRVNAASLSIGCSGLCLPEL*RHCTNQSTNCRSC 194
           R  R+N  ++S GC   CL     +  N S+ CRSC
Sbjct: 6   RSCRLNVDNMSSGCRSCCL-----NVDNMSSGCRSC 36


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/91 (25%), Positives = 40/91 (43%)
 Frame = +1

Query: 343 KRKMKALGSLSMMSFLDLSAQNIRAAKMRVIDHTGRRASVNVSTFARRFFLAK*TLYTAT 522
           KRK+  +G +++   + +S   +  +  RV  HT  R  ++ ST           L+T+T
Sbjct: 379 KRKIGVIGDITVG--IVISRVPLHTST-RVALHTSTRVPLHTSTCVPLHTSTPVALHTST 435

Query: 523 GAVPNKPTR*INTSKNKANDTSPYTWNLTSP 615
             +   P   + T  +    TSP+ W  T P
Sbjct: 436 HVLYTSPHGWLYTRPHTCLYTSPHAWLYTRP 466


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +3

Query: 243 GKQRPEHPIDKLAALTRHSRNH*TTCSITEECPEEKNEGSGVAFNDVVLGFVSPEYKG 416
           G +RP  P ++ A      R H    + TE C   K  GS     D++L FVS  +KG
Sbjct: 435 GGRRPNEPYERTA------RVHTILSTDTETCFCAKRYGSAAGQIDMLLRFVSALFKG 486


>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 215 EYELS-ILYALVVFSVLAHVHYGICVVKQICGYYKI 111
           E+ LS IL+ +  FS+   V  GIC V  I  Y+KI
Sbjct: 160 EFGLSVILFGIRKFSIALCVVVGICAVVIIISYFKI 195


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
 Frame = -2

Query: 458  EALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLF---SNTASRLMIAGMAS 288
            E   P W  TLI   ++ W D   N+I  + P   + +F       S    R +   +  
Sbjct: 1017 ETRSPTWDQTLIFQEVVLWGD--VNEIAVNPPTIVVEIFDKDIGGDSEFIGRALARPIVK 1074

Query: 287  QRCELVNWMFWP 252
              CE     F+P
Sbjct: 1075 MACEPYEKPFFP 1086


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 157 CTCANTLNTTSAYRIDSSYSGLYNDVTTPVSKGQ 258
           CTCA++L     Y +DS  +   ND     S G+
Sbjct: 202 CTCASSLGVERGYILDSQMTSSSNDGAYTASAGR 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,672,970
Number of Sequences: 59808
Number of extensions: 478455
Number of successful extensions: 1177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)