Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p23r
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical ... 128 3e-30
Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical p... 45 6e-05
AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical ... 45 6e-05
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 38 0.005
AF039045-12|ABJ99097.1| 272|Caenorhabditis elegans Serpentine r... 29 2.3
Z69902-4|CAA93763.1| 410|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 28 5.3
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 28 5.3
AF016655-1|AAK72055.3| 318|Caenorhabditis elegans Serpentine re... 28 7.0
Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical pr... 27 9.3
AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative telo... 27 9.3
AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein. 27 9.3
AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock (biolog... 27 9.3
>AF039712-3|AAK21400.3| 393|Caenorhabditis elegans Hypothetical
protein F54D7.2 protein.
Length = 393
Score = 128 bits (310), Expect = 3e-30
Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 3/194 (1%)
Frame = -2
Query: 674 YDVSMWTSSMIFIVAGLYTPGLVKFH---VYGDVSFALFFEVLIHLVGLLGTAPVAVYNV 504
YDVS + ++ + Y G FH + G V+FA FE+ ++ L+ A YNV
Sbjct: 196 YDVSQF--GLVIVYLWTYIVGYQWFHFDVLGGIVNFAFTFEIGFYMCCLMSLIASA-YNV 252
Query: 503 YLARKNRRAKVETLTEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSN 324
+ A K K T+ +RP W + ++ + I+WA S ++I++DPR F F GT+FSN
Sbjct: 253 HKAEK---LKQPTILAGIRPAWPVVILFGSSIYWAVHSPTNVIDADPRFFFFCMGTVFSN 309
Query: 323 TASRLMIAGMASQRCELVNWMFWPLLTGVVTSLYKPEYELSILYALVVFSVLAHVHYGIC 144
RL+IA MAS C++ N L+ + S Y P EL IL + H+HYGIC
Sbjct: 310 ITCRLIIAQMASTVCDIYNLTLGIYLSTIALSFYNPSNELPILRVSTLVITALHLHYGIC 369
Query: 143 VVKQICGYYKIDCF 102
VV+Q+C ++KI F
Sbjct: 370 VVRQLCRHFKIYAF 383
>Z77662-16|CAJ90504.1| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 44.8 bits (101), Expect = 6e-05
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Frame = -2
Query: 665 SMWTSSMIFIVAGLYTPGLVKFHVYGDVSFALFFEVLIHLVGLLGTAPVAVYN---VYLA 495
+ W+ + + L+ P L ++G +AL +L+ VGL GT A+ ++
Sbjct: 227 AQWSIISMLLCTSLFGPKLWSVGIFG---YALK-HLLLACVGL-GTIYQALGYLSVIFTD 281
Query: 494 RKNRRAKVETLTEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTAS 315
+ T L P + ++ KS + + + F+ FG + + +
Sbjct: 282 GVGKNGSTVAGTSVLFPACPLLAVIVPYCMIYSKSASGVYDDLIVIFVLQFGAVAAKATN 341
Query: 314 RLMIAGMASQRCELVNWMFWPLLTGVVTSLYKPEY-ELSILYALVVFSVLAHVHYGICVV 138
RL++A M+ L +W++ + ++ Y + E ++L V+ + + Y + +
Sbjct: 342 RLIVAHMSRSELSLWDWIYMGPIALMINQYYDIKINEPTLLKYTTVYVYASLLVYCLFIT 401
Query: 137 KQICGYYKIDCFLV 96
+QIC + I CF V
Sbjct: 402 RQICDHMGIYCFKV 415
>AL033512-5|CAA22073.2| 424|Caenorhabditis elegans Hypothetical
protein Y49A3A.1 protein.
Length = 424
Score = 44.8 bits (101), Expect = 6e-05
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Frame = -2
Query: 665 SMWTSSMIFIVAGLYTPGLVKFHVYGDVSFALFFEVLIHLVGLLGTAPVAVYN---VYLA 495
+ W+ + + L+ P L ++G +AL +L+ VGL GT A+ ++
Sbjct: 227 AQWSIISMLLCTSLFGPKLWSVGIFG---YALK-HLLLACVGL-GTIYQALGYLSVIFTD 281
Query: 494 RKNRRAKVETLTEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTAS 315
+ T L P + ++ KS + + + F+ FG + + +
Sbjct: 282 GVGKNGSTVAGTSVLFPACPLLAVIVPYCMIYSKSASGVYDDLIVIFVLQFGAVAAKATN 341
Query: 314 RLMIAGMASQRCELVNWMFWPLLTGVVTSLYKPEY-ELSILYALVVFSVLAHVHYGICVV 138
RL++A M+ L +W++ + ++ Y + E ++L V+ + + Y + +
Sbjct: 342 RLIVAHMSRSELSLWDWIYMGPIALMINQYYDIKINEPTLLKYTTVYVYASLLVYCLFIT 401
Query: 137 KQICGYYKIDCFLV 96
+QIC + I CF V
Sbjct: 402 RQICDHMGIYCFKV 415
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 38.3 bits (85), Expect = 0.005
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Frame = -2
Query: 461 TEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTASRLMIAGMASQR 282
T L P++ + +++ I +K+++ + + F FG + + +RL+IA M+
Sbjct: 264 TSVLFPLFPLLMVVIPFIMIYNKTESTVFDDHITLFSLCFGAVGAKATNRLVIAHMSKSE 323
Query: 281 CELVNWMFWPLLTGVVTSLYKPEY-ELSILYALVV-----FSVLAHVHYGICVV-KQICG 123
L +W++ L ++ Y + E +L+ V F LA + C+V I G
Sbjct: 324 LRLWDWIYVGPLALMLNQYYDFVFDEYVLLWIATVGFENFFVHLAGIVQTFCLVFFSIIG 383
Query: 122 YYKID-CFLVPK 90
K D CFL K
Sbjct: 384 NLKSDFCFLKTK 395
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 38.3 bits (85), Expect = 0.005
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Frame = -2
Query: 461 TEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTASRLMIAGMASQR 282
T L P++ + +++ I +K+++ + + F FG + + +RL+IA M+
Sbjct: 264 TSVLFPLFPLLMVVIPFIMIYNKTESTVFDDHITLFSLCFGAVGAKATNRLVIAHMSKSE 323
Query: 281 CELVNWMFWPLLTGVVTSLYKPEY-ELSILYALVV-----FSVLAHVHYGICVV-KQICG 123
L +W++ L ++ Y + E +L+ V F LA + C+V I G
Sbjct: 324 LRLWDWIYVGPLALMLNQYYDFVFDEYVLLWIATVGFENFFVHLAGIVQTFCLVFFSIIG 383
Query: 122 YYKID-CFLVPK 90
K D CFL K
Sbjct: 384 NLKSDFCFLKTK 395
>AF039045-12|ABJ99097.1| 272|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 15 protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = -2
Query: 560 VLIHLVGLLGTAPVAVYNVYLARKNRRAKVETLTEALRPVWSM---TLILAALIFWADKS 390
++I LVGLL + N+++ K R K + + R M L+ L+ +
Sbjct: 6 LIIALVGLLSSLAACFINIFMLTKMERKKKDMILFYFRIFLDMVIGALVALFLLIGIINT 65
Query: 389 KNDIIESDPRAFIFLFGTLFSN--TASRLMIAGMASQR 282
+ I S+ ++ +F G SN T +++ ++++R
Sbjct: 66 SSPIQFSEMQSLMFYLGLASSNLVTVRSIIVLSVSTER 103
>Z69902-4|CAA93763.1| 410|Caenorhabditis elegans Hypothetical
protein C47D12.5 protein.
Length = 410
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 245 TGVVTSLYKPEYELSILYALVVFSVL 168
+ VV Y+ EYE+S + AL+ FSVL
Sbjct: 290 SSVVLPSYEKEYEISTIVALIGFSVL 315
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 141 HTYPVMHMCQHAKYDKCVQDRQFVL 215
HT +M MC +++D C+ DR ++
Sbjct: 1060 HTLKLMCMCFESQFDHCIVDRPLII 1084
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 141 HTYPVMHMCQHAKYDKCVQDRQFVL 215
HT +M MC +++D C+ DR ++
Sbjct: 1060 HTLKLMCMCFESQFDHCIVDRPLII 1084
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 141 HTYPVMHMCQHAKYDKCVQDRQFVL 215
HT +M MC +++D C+ DR ++
Sbjct: 1063 HTLKLMCMCFESQFDHCIVDRPLII 1087
>AF016655-1|AAK72055.3| 318|Caenorhabditis elegans Serpentine
receptor, class h protein297 protein.
Length = 318
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 230 SLYKPEYELSILYALVVFSVLAHVHYGICVV 138
SL P+ ILY L FSV H+ G C++
Sbjct: 3 SLSYPDVYSKILYVLAGFSVPIHIFGGYCIL 33
>Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical
protein R07B5.4 protein.
Length = 322
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = -2
Query: 467 TLTEALRPVWSMTLILAALIFWADKSKNDIIESDPRAFIFLFGTLFSNTASRLMIAGMAS 288
T+ A ++S + L IF+ +D+++S RA +F L + ++
Sbjct: 29 TIVTATYTIFSFGVTLKMCIFYLKNRNSDVLKSGLRADVFRIFLLMQLWNAFHVLLDFLV 88
Query: 287 QRCELVNWMFWPLLTGVVTSLYKPEYELSILYAL 186
R L + + T SLYKPE L IL L
Sbjct: 89 VRIPLTS-----IFTSYC-SLYKPEVALKILTLL 116
>AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative
telomere binding protein protein.
Length = 877
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 302 AGMASQRCELVNWMFWPLLT---GVVTSLYKPEYELSILYALVVFSVLAHVHYGIC 144
AG+ ++ + +MF+PLL G SL + +L L +L++ + + +V G+C
Sbjct: 722 AGVVNRLAQAAKYMFYPLLVLPRGENASLLGKDSDL--LASLIMVASMVYVRCGVC 775
>AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein.
Length = 877
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 302 AGMASQRCELVNWMFWPLLT---GVVTSLYKPEYELSILYALVVFSVLAHVHYGIC 144
AG+ ++ + +MF+PLL G SL + +L L +L++ + + +V G+C
Sbjct: 722 AGVVNRLAQAAKYMFYPLLVLPRGENASLLGKDSDL--LASLIMVASMVYVRCGVC 775
>AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock
(biological timing) abnormalityprotein 2 protein.
Length = 877
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 302 AGMASQRCELVNWMFWPLLT---GVVTSLYKPEYELSILYALVVFSVLAHVHYGIC 144
AG+ ++ + +MF+PLL G SL + +L L +L++ + + +V G+C
Sbjct: 722 AGVVNRLAQAAKYMFYPLLVLPRGENASLLGKDSDL--LASLIMVASMVYVRCGVC 775
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,087
Number of Sequences: 27780
Number of extensions: 354204
Number of successful extensions: 1162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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