Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23f
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...   101   7e-23
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    29   0.44 
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   1.8  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   5.4  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.4  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score =  101 bits (243), Expect = 7e-23
 Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = +3

Query: 255 LSQNHFDGLKKYKYSAIDTSPLSNYVMHPSW-NFITRFIPKWIAPNLITFAGFVCMVIVI 431
           L++     L  YKYSAID S LS Y++ P W N + + IP  +APNLIT  G   +VI I
Sbjct: 3   LNRKQLKNLHNYKYSAIDNSLLSKYILKPYWWNQLLKVIPMSMAPNLITLIGLGFVVINI 62

Query: 432 LLLTIFDYDFHGAERLRQGVDEYRIPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPL 611
           L + ++ Y +         +D +  P+W   +  + LFL  + D IDG QAR+ G S PL
Sbjct: 63  LTMLVYKYHYE--------MDAF--PSWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPL 112

Query: 612 GELFDHGLDS 641
           G+LFDHG+D+
Sbjct: 113 GQLFDHGVDA 122


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 232 SMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVTFDLNTSLYANLTFFRI*TLLFCIVM 53
           S+ + RFL  LT +    +L   +   +  FS     L+ S Y NL ++ + T L C+V+
Sbjct: 116 SLSIWRFLYWLTFVLSWIILPFVQGYMESKFSTPRSRLSDSFYKNLRYYLLLTFLTCVVI 175

Query: 52  IIL 44
             L
Sbjct: 176 AYL 178


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 318 LSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFD 452
           LS+ V+ P + F + F+ KW+    I   GF+  ++ +++  + D
Sbjct: 353 LSSLVIAP-FVFFSTFLSKWLEDRQIMLYGFMMGIVALIVHLVLD 396


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 216 RITTMEKLFEYKY---LSQNHFDGLKKYKYSAIDTSPLSNY--VMHPSWNFI 356
           RI   E  ++Y +   LSQ   DGL    Y++++  P S Y   ++ S+N++
Sbjct: 351 RICKEEMKYDYAHISKLSQRLIDGLLAIPYTSLNGDPKSRYPGCVNISFNYV 402


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 309 TSPLSNYVMHPSWNFIT-RFIPKWIAPNL 392
           TSPL +Y     +N ++ +F+PKW +P L
Sbjct: 225 TSPL-DYTAKVQFNRLSGKFMPKWASPEL 252


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 18  LYESACSVNKIIITIQN 68
           LYE   S+ KI++T+QN
Sbjct: 677 LYERRISIGKIVLTLQN 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,015
Number of Sequences: 5004
Number of extensions: 58660
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)