Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23f
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    61   9e-10
02_01_0145 + 1040798-1040934,1041152-1041194,1041999-1042076,104...    41   7e-04
06_02_0233 + 13315579-13316046                                         31   0.79 
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    28   7.4  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    28   7.4  
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99...    27   9.7  
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95...    27   9.7  
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084...    27   9.7  
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    27   9.7  

>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +3

Query: 507 PNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLGELFDHGLDS 641
           P W  +A G+LLFL    D +DGKQAR+   S PLGELFDHG D+
Sbjct: 122 PRWVHLAHGLLLFLYQTFDAVDGKQARRTSSSSPLGELFDHGCDA 166



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWI 380
           Y+  +  + LK+Y+YS  D S ++ YV+ P W+      P W+
Sbjct: 3   YIGAHGVETLKRYRYSGQDHSVVAKYVLQPFWSRCVTLFPLWM 45


>02_01_0145 +
           1040798-1040934,1041152-1041194,1041999-1042076,
           1042444-1042544,1042900-1042994,1043161-1043229,
           1043432-1043501,1043757-1043820,1043907-1043947,
           1044098-1044182,1044608-1044682
          Length = 285

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLIT 398
           Y+ Q+    L++YKYS +D S ++ Y++ P W+      P W   + I+
Sbjct: 3   YVGQHGVATLRRYKYSGVDHSLVAKYILQPFWSRFVNLFPLWFPDSSIS 51


>06_02_0233 + 13315579-13316046
          Length = 155

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 554 QSRWYRRKASSEAWRVRPAGRTLRSRLR 637
           +SRW RR A  E  R RPA R  RSR R
Sbjct: 87  RSRWQRRPARRERRRWRPAWRERRSRWR 114


>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 246 YKYLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVC 416
           Y  LS N+ DG+   K+ A   S  S Y+ + S   +    P+W+ P  + +A F C
Sbjct: 468 YLDLSFNNLDGVITEKHFAHLASLESIYLPYNSLEIVVD--PEWLPPFRLKYAYFYC 522


>05_03_0460 - 14294931-14295110,14295200-14295234,14295358-14295457,
            14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 427  TITIQTKP-ANVIKFGAIHFGINLVIKFQLGCIT*LLSGLVSMALYLYFLSPSKWF*DKY 251
            ++ + T P A+   F A + G+N V+    G +  +L GL +   + + LS ++W   + 
Sbjct: 826  SLLLSTCPSASCNYFPAAYTGVNSVVP---GNLLQILEGLEARGNWRWALSVTEWVYKEN 882

Query: 250  LYSKSFSMVVIRFLQILT 197
            +Y    S  +  FLQ L+
Sbjct: 883  IYEHGKSRYICDFLQELS 900


>12_01_0132 -
           990833-991287,991470-991593,991987-991991,992628-992763,
           993417-993751,994912-994966
          Length = 369

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 246 YK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 422
           YK Y+ +N   GLK     A+       +  H  W    RF+ +   PNL+   G+ C  
Sbjct: 96  YKGYIDENVRVGLKSLPV-AVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCED 154

Query: 423 IVILLLTIFDYDFHGA 470
              LL  ++++ F G+
Sbjct: 155 DHRLL--VYEFMFRGS 168


>11_01_0121 -
           948450-948904,949073-949224,949389-949449,950201-950336,
           951042-951376,952523-952577
          Length = 397

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 246 YK-YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMV 422
           YK Y+ +N   GLK     A+       +  H  W    RF+ +   PNL+   G+ C  
Sbjct: 96  YKGYIDENVRVGLKSLPV-AVKVLNKDGHQGHREWLTEVRFLGQLRHPNLVKLIGYCCED 154

Query: 423 IVILLLTIFDYDFHGA 470
              LL  ++++ F G+
Sbjct: 155 DHRLL--VYEFMFRGS 168


>02_04_0415 +
           22706964-22707072,22707784-22708077,22708304-22708416,
           22708504-22709002,22709106-22709144,22709228-22709515,
           22709766-22709905,22710468-22710960,22711082-22711356
          Length = 749

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = -3

Query: 307 SMALYLYFLSPSKWF*DKYLYSKSFSMVVIRFLQILTRLQGQKMLVIFRNKNKLLFSFVT 128
           ++++  Y LS SK +   Y+ S       + FL  L+    +K  ++FR  N+L     T
Sbjct: 181 NLSMRSYILSVSKQYIADYISSPE-----VNFLTSLSGRVNKKTKLVFRLLNELAVEPST 235

Query: 127 FDLNTSLYANLTFFR 83
                S+  NLTF +
Sbjct: 236 NQTYGSMLKNLTFIK 250


>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 504 IPNWALMACGVLLFLAYNLDGIDGKQARKLGVSGPLGELFD 626
           +  W L A G L  L+   D +DG  ARK+G++   G   D
Sbjct: 157 VNEWYLPAFGTLA-LSGASDWLDGFLARKMGINSVFGSYLD 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,976
Number of Sequences: 37544
Number of extensions: 334009
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)