Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p23f
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)                  31   1.1  
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)                   30   1.9  
SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 30   1.9  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               28   5.7  
SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)                 28   5.7  
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 28   7.5  
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 279 LKKYKYSAIDTSPLSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 449
           L ++KYSA  T  L   +    W ++ + +P W+APN ITF G        L+L ++
Sbjct: 13  LAQHKYSAQSTEILDP-IFQVYWRWLVQQVPLWLAPNTITFLGLFINAATSLILFVY 68


>SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)
          Length = 279

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +3

Query: 282 KKYKYSAIDTSP----LSNYVMHPSWNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIF 449
           K  K   I TSP    L   +    W  I ++ P W+   L  F      V V+++LT+ 
Sbjct: 41  KNSKEHNIKTSPKSDNLKTKIDEIIWKLIEQYFPVWLKIVLTPFKANSLAVCVVVVLTVA 100

Query: 450 DYDFHG 467
            Y F G
Sbjct: 101 IYPFWG 106


>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
          Length = 280

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 256 CLKTILTGLRNISTAPSTQAR-LATMLCIRVGTLSLDLSQN 375
           CL+  L    NI+  PS   R +  +L +R+G L  DLS+N
Sbjct: 7   CLQEDLCASYNIARKPSPGLRYICALLSMRIGDLGADLSKN 47


>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 345 WNFITRFIPKWIAPNLITFAGFVCMVIVILLLTIFDYDFHG 467
           W  I ++ P W+   L  F      V V+++LT+  Y F G
Sbjct: 304 WKLIEQYFPVWLKIVLTPFKANSLAVCVVVVLTVAIYPFWG 344


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 205 SEGNV*RPWKNSSSINICLKTILTGLRNISTAPSTQARLATMLCIRV 345
           S G    PW N S+I + L ++ T      T   T  ++ T+  IR+
Sbjct: 253 SYGETALPWSNHSNITLTLDSLATTAEGYFTKDLTGLKIWTLYSIRI 299


>SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)
          Length = 457

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +3

Query: 81  IRKNVKLA*SEVFKSNVTNENNNLFLFRNITSIF*PWSLVRI*RK---RITTMEKLFEYK 251
           IRK  K   ++  K+N+ N  N   L++ I +IF P   V +  +     T  E +F+  
Sbjct: 94  IRKAKKTFYNDAIKNNLENPKN---LWKIIRNIF-PSKHVNLPNRLTVNDTLYEDIFDIA 149

Query: 252 YLSQNHFDGLKKYKYSAIDTSPLSNYVMHPSWNFITRFI 368
           Y    HF  +      +ID  P       P W+ +T FI
Sbjct: 150 YSFNEHFSNIS--SQVSIDAVP-----EFPDWSVLTNFI 181


>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1236

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461  PWRGKT*ARRRR-IQDTELGVNGMRRFAVFGLQSRWYRRKASSEAWRV 601
            P R KT  R R  + DTE G   +R+F    L+S  YR K  ++ ++V
Sbjct: 1090 PDRNKTRGRDRYLVVDTEGGFCNIRKFIGSQLRSTSYRVKKKTDCYKV 1137


>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 313 LVSMALYLYFLSPSKWF*DKY 251
           +V MA+Y+ F+ P+ W  D+Y
Sbjct: 63  MVFMAVYILFIVPASWILDRY 83


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 241 SSINICLKTILTGL--RNISTAPSTQARLATMLCIRVGTLSLDLSQN 375
           SS+   L T+ T     N    PST  + AT L  R+    L LSQN
Sbjct: 120 SSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQN 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,671,074
Number of Sequences: 59808
Number of extensions: 411974
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)