Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p23f
(648 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 26 0.36
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 23 2.5
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 23 2.5
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 23 2.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.4
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.9
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 5.9
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 22 5.9
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 25.8 bits (54), Expect = 0.36
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 476 SFRAMEIVVKYSQQQNHYHHTDEAGERY*VRCYPFWDKSSD 354
S ++ E+ + + + ERY VRCYP +D +++
Sbjct: 429 SVKSSELSISWDAPITEIGGDSDLVERYEVRCYPRYDDATN 469
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 393 ITFAGFVCMVIVILLLTIFDYDFHGAER 476
IT+ G+V + L+ TIF+ D+ A R
Sbjct: 366 ITWLGYVNSALNPLIYTIFNLDYRRAFR 393
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 393 ITFAGFVCMVIVILLLTIFDYDFHGAER 476
IT+ G+V + L+ TIF+ D+ A R
Sbjct: 366 ITWLGYVNSALNPLIYTIFNLDYRRAFR 393
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 393 ITFAGFVCMVIVILLLTIFDYDFHGAER 476
IT+ G+V + L+ TIF+ D+ A R
Sbjct: 366 ITWLGYVNSALNPLIYTIFNLDYRRAFR 393
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 9 AATLYESACS-VNKIIITIQNSNV*IRKNVKLA*SEVFKSNVTNE 140
A LY+ S NK++ + N++ +R +KL S++ N+ N+
Sbjct: 29 AKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 9 AATLYESACS-VNKIIITIQNSNV*IRKNVKLA*SEVFKSNVTNE 140
A LY+ S NK++ + N++ +R +KL S++ N+ N+
Sbjct: 29 AKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 446 YSQQQNHYHHTDEAGE 399
Y QQQ HH D + E
Sbjct: 98 YLQQQQQQHHQDSSSE 113
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 127 FDLNTSLYANLTFFR 83
FDL S Y NLTF R
Sbjct: 212 FDLMGSPYRNLTFVR 226
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -2
Query: 335 HNIVAKRACVDGAVLIFLKPVKMVL 261
HN+V K AC G + + M +
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTV 138
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = -2
Query: 335 HNIVAKRACVDGAVLIFLKPVKMVL 261
HN+V K AC G + + M +
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTV 138
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.8 bits (44), Expect = 5.9
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 158 ISKYYQHLLTLESCQDLKETYNDHGKTL 241
++ Y + ++ C ++ E+Y+ + KTL
Sbjct: 643 LNVYPEFQENVQLCSEISESYSSNNKTL 670
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,383
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -