Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p22r
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56707| Best HMM Match : DUF1361 (HMM E-Value=4.5)                   27   6.1  
SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_56707| Best HMM Match : DUF1361 (HMM E-Value=4.5)
          Length = 142

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 40  LVLI*IAYRLGLTKTKTGESFESHVPSFFDWGEWSPLFSVSEIFTKRSLNF 192
           L L+ + +RL  TK    ES+   +   F +  WS     + IF +  L+F
Sbjct: 48  LALVPLLFRLNNTKDVLDESWGEILCVMFGYSAWSRFIVAASIFERIILSF 98


>SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +1

Query: 13  KNAETKKKQLVLI*IAYRLGLTKTKTGESFESHVPSFFDWGEWSPLFSVS-----EIFTK 177
           ++ E    +LV   I   +GL   K  E FE+++P F D   W  L S S     ++   
Sbjct: 34  ESEEAGSLELVKSQICDNVGLYAQKYDEEFETYLPKFVD-AIWHLLLSTSNNIKHDLLVS 92

Query: 178 RSLNFFSTLS 207
            ++ F +++S
Sbjct: 93  NAIQFLASVS 102


>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1243

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 336 KGLGRYPQRLHGPSVRQGDAVHHRQAGPSHR 244
           +G+G +P+RL  P  R+     HR  GP  R
Sbjct: 876 RGMGNHPRRLPLPVARRTTLRCHRGRGPRRR 906


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 61   YRLGLTKTKTGESFESHVP----SFFDWGEWSPLFSVSEIFTKRSLNFFSTLSSEMDLS 225
            Y L L  +  G + ++ V     S F   EW PLF V ++ T + L+   T + +++LS
Sbjct: 1056 YDLSLRPSSLGRNIKARVQIKNLSHFYVKEWKPLFPVGKLVTGKVLSINPT-NGQIELS 1113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,441
Number of Sequences: 59808
Number of extensions: 246963
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)