Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21r
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    33   0.042
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.39 
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    28   1.6  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   2.7  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   6.3  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   6.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.4  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 304 FILNLVCRDVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFATNSRKPYENDALETAVRS 125
           F   L+CRD  L       +  H KH    K+ E +  I+ A +  K Y  DAL  ++  
Sbjct: 254 FSNELICRDEGLHTDFACLMFSHLKHRPGRKVVEAI--IVEAVDIEKEYFTDALPVSLLG 311

Query: 124 LN 119
           +N
Sbjct: 312 MN 313


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 387 SVRSLLSMSNSTAPYLCPETASSAKKSNPSLTKTRSLSSSFKSK 518
           S  SL+S + S++    P T SS+  S+ S + + S SSS  SK
Sbjct: 124 SSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSK 167


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 628 LGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQH 518
           +G GGG L   + R     +VTAV+  P  +EVA +H
Sbjct: 84  IGCGGGILSESMARL--GASVTAVDASPMAIEVAKKH 118


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 337 EVHSILDDDGHFILNLVCRDVELQASMLL 251
           +V+S++DDDGH  L+  C    ++   LL
Sbjct: 239 QVNSVIDDDGHTSLHWACSMGHIEMIKLL 267


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 718 KFVIDYGHISLYHSFMCVGV----QLCKSSHVAVLGLGGGSLCMFLRRCREDLNVTAVEL 551
           KF  D+G   L +  +  G+     L +S  V  +G G G+L +  R   +   V AVE+
Sbjct: 23  KFNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTV--RMLEKARKVIAVEM 80

Query: 550 DPAMLEVATQ 521
           DP M    T+
Sbjct: 81  DPRMAAEITK 90


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 384 PSVRSLLSMSNSTAPYLCPETASSAKKSNPSLTKTRSLSS 503
           PS     S +N T  +    T    +K+NPSLT++ S+SS
Sbjct: 128 PSNGDSSSYANGTDLHGNTGTMQQEEKANPSLTRSDSVSS 167


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 447 ASSAKKSNPSLTKTRSLSSSFKSKCCV 527
           ++S + SN ++T+ +++ SSF S+C V
Sbjct: 75  STSEQPSNSNVTEEKNMGSSFHSECKV 101


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 181 ATNSRKPYENDALETAVRSLNSAARSQNLVNVKCVDIKDF 62
           A  S + Y+ND L +    L   ++ + +V+ KC+ + +F
Sbjct: 530 ADRSLELYDNDKLSSIDALLIQDSKLREMVSEKCISLSNF 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,240
Number of Sequences: 5004
Number of extensions: 58779
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)