Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p21r
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329... 113 2e-25
08_02_1283 - 25861355-25862755 66 2e-11
11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212 31 0.71
02_03_0271 + 17139766-17140737 31 0.94
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 0.94
10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049 30 1.6
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 30 2.2
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516... 29 2.9
07_03_0633 + 20120560-20123464,20123608-20123672 29 5.0
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352... 29 5.0
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431... 28 6.6
>04_03_0669 + 18531419-18531820,18532589-18532690,18532882-18532948,
18533530-18533708,18533792-18534052,18535324-18535407,
18535517-18535564,18535654-18535718,18536849-18536897,
18538132-18538372,18539623-18539744,18539942-18540022,
18540094-18540168,18540408-18540550,18540662-18540812,
18540915-18541097
Length = 750
Score = 113 bits (271), Expect = 2e-25
Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 27/230 (11%)
Frame = -2
Query: 724 KTKFVIDYGHI-SLYHSFMCVGVQLCKSS-----------HVAVLGLGGGSLCMFLRRCR 581
KT ID+ ++ S YHS + G L S+ V+GLG G+L MFLR C
Sbjct: 502 KTVLRIDHSYLGSSYHSSIISGFSLIASALDSAAVAGTKVSTTVIGLGAGTLPMFLRGCL 561
Query: 580 EDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAEEAV------------SG 437
L++ VELDP + EVA ++F F+ + AV +G
Sbjct: 562 PFLDIKVVELDPLVEEVANKYFGFSTDEQLQVHLGDGIKFIDDIAVANSRATTQQLMSTG 621
Query: 436 HKYGAV---LFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDVELQ 266
++ AV + D+DS D + GLSCP F+ED L V LD+ G FI+NLV R ++
Sbjct: 622 NENNAVKILIVDVDSSDVSSGLSCPHANFVEDSFLLAVKKFLDEGGLFIINLVSRSSAVR 681
Query: 265 ASMLLTLKRHFKHLVSVKLYEEVNEIIFATNSRKPYENDALETAVRSLNS 116
++ LK F+HL S+ L E++NE++FAT S + +N+ ++ AV L +
Sbjct: 682 EMVVSRLKAAFEHLYSLHLEEDLNEVLFATPSERCLDNNNMDEAVAKLKA 731
>08_02_1283 - 25861355-25862755
Length = 466
Score = 66.5 bits (155), Expect = 2e-11
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Frame = -2
Query: 625 GLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAEEA 446
G+GGG+L M +R + +V +E D +L+VA HF + + A
Sbjct: 280 GIGGGALLMSIRMGLQ-CDVLGIEADGVVLDVARSHFGLVEDEFLQVRVGDAIQMIQDFA 338
Query: 445 VSGH---KYGAVLFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFILNLV--CR 281
G + A++ D+DS D G+S PP + ++ +L +IL DG FILN++
Sbjct: 339 HQGDPDMNFSAIMVDLDSSDAICGVSAPPLEMTKESILLASRTILHRDGAFILNVIPPAA 398
Query: 280 DVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFATNS 170
D ++ L+ F L + + N ++ AT S
Sbjct: 399 DGSFYKGLIDVLRHVFSELYEINVSNGENFVLVATVS 435
>11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212
Length = 270
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 551 QLHGGHVEVLPAS--PQEHTETTPAEPKDRDVAGLAQLHSH 667
+L G +E +P P + + P EPKD DV + + H H
Sbjct: 128 KLAAGEIEAVPEQTMPDQPEPSQPEEPKDADVLVMVRTHKH 168
>02_03_0271 + 17139766-17140737
Length = 323
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 646 SSHVAVLGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHF 515
+S +AVLG G GS + D++V E+DPA++ + F
Sbjct: 124 ASSLAVLGFGAGSAARAVLHFFPDISVHGWEIDPAVVSASRDFF 167
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 572 EVLPASPQEHTE---TTPAEPKDRDVAGLAQLHSHAHEGMVQRYVPV 703
+ LPA P+E E T + +DR A L H H+ Q Y+PV
Sbjct: 2444 KALPAEPEEQEENQVTKEQDEEDRHDAELGDAHEEDHKEAEQDYLPV 2490
>10_08_0244 + 16129365-16129424,16130203-16130391,16130918-16131049
Length = 126
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +3
Query: 168 LLFVAKIISFTSSYSFTDTRCLK 236
LL + ++++FT++YSF+D RC +
Sbjct: 36 LLDLTRVLAFTANYSFSDRRCTR 58
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 637 VAVLGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHF 515
VA+LGLG G+ + + L + E+DP ++E++ +F
Sbjct: 140 VALLGLGAGTAAHLMLKFYPWLQLVGWEIDPKIIELSRDYF 180
>01_01_0674 +
5162291-5162376,5162530-5162560,5162689-5163207,
5165561-5166010,5166050-5166134,5167374-5167399
Length = 398
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 268 QASMLLTLKRHFKHLVSV--KLYEEVNEIIFATNSRKPYENDALETAVRSLNSAARSQNL 95
+AS+L+ + H K L S +L E+ E+ SR +ND ETA + ++L
Sbjct: 215 KASILIRAREHIKSLESKLSELEEKNRELEARLASRPAAKNDKGETAAAEAGDETKREDL 274
Query: 94 VNVK 83
V ++
Sbjct: 275 VEIE 278
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 108 LAAEFNDLTAVSRASFSYGFLLFVAKIISFTSSYSFTDTRCLKCLLRVRSIEAWSSTSRH 287
+ E + A+SRASF+ F + +TR ++ LR R + S+TS
Sbjct: 27 ILVEATERRAISRASFAAWLQQFKDAVAEAEDLLDDLETRRIRAALRARGSKLGSATSLA 86
Query: 288 TRF 296
RF
Sbjct: 87 LRF 89
>02_01_0489 -
3522907-3523363,3523519-3523610,3525755-3526171,
3526488-3526565,3527021-3527292,3529346-3529541
Length = 503
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 557 HGGHVEVLPA-SPQEHTETTPAEPKDRDVAGLAQLHSHAHEG 679
HGG+ EVLP S H + +PA A Q + H EG
Sbjct: 237 HGGYEEVLPCFSSSHHQQPSPASMNASAAADDDQDYHHLSEG 278
>07_03_0451 +
18340166-18340533,18340576-18341006,18343057-18343184,
18343329-18343958,18344761-18345480
Length = 758
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 424 AVLFDMDSKDRTLGLSCPPKQFLED-KVLEEVHSILDDDGHFILNLVCRDVELQASMLLT 248
A L D RT+ CP L D K +HS ++ +G+ ++ VCR + + S +L
Sbjct: 401 AALADSLDVVRTMLQKCPDCATLRDAKGRTFLHSAVEAEGYRVVEYVCRRMPKEFSSVLN 460
Query: 247 LK 242
++
Sbjct: 461 MQ 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,731,395
Number of Sequences: 37544
Number of extensions: 411723
Number of successful extensions: 1468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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