Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21r
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)           113   1e-25
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   30   2.2  
SB_2054| Best HMM Match : DUF1547 (HMM E-Value=8)                      29   2.9  
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   5.1  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    29   5.1  
SB_45657| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=6.4)            28   6.7  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score =  113 bits (272), Expect = 1e-25
 Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
 Frame = -2

Query: 649  KSSHVAVLGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXX 470
            K     ++GLGGG L MF+ +    + + AVELD A++ VA   F               
Sbjct: 421  KKKQALIVGLGGGGLAMFIYQFFSQVAIDAVELDEAVVSVAKTQFGCIEDKRLAIHVKDG 480

Query: 469  XDFLAEE--AVSGHKYGAVLFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFIL 296
              F+ E    V   +Y A++FD+DSKD T+G+S P K F+   +L  V  +L ++G F+L
Sbjct: 481  LKFIEEAHIKVPRPQYHAIMFDIDSKDVTVGMSAPSKDFVTPALLTRVKELLHNEGVFVL 540

Query: 295  NLVCRDVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFATNSRKPYE--NDAL--ETAVR 128
            NL CRD +L+AS++  +K  F  +  V + ++VN+++FA   + P E   D L   ++V 
Sbjct: 541  NLACRDKQLKASVIEDIKASFPRVYLVDIDDDVNDVLFA-KPQPPAEPKQDLLVVRSSVD 599

Query: 127  SLNSAARSQNLVNVKCVDIKDFLQSINI 44
            +L    +S  L N +C D+ + ++ + I
Sbjct: 600  NLQKHGKSTGLWNGEC-DLCEMVEGLQI 626


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 216 TDTRCLKCLLRVRSIEAWSSTSRHTRFRMKCP 311
           TD  C +C  RV +I  WS+T R  + R +CP
Sbjct: 253 TDFGCCRCSERVGAIRRWSATCRPCQCRGRCP 284


>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 379 SCPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDVELQASMLLTLKRHFKHLVSV 215
           S   K+ ++ KV       L+D G  +   V  ++E  A  L TL + ++HL++V
Sbjct: 163 SAHSKKMVQRKVERFEREKLEDTGKILREFVRLEMEFHAHALQTLTKAYRHLMNV 217


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
 Frame = +3

Query: 192 SFTSSYSFTDTRCLKCLLRVRSIEAWSSTSRHTRFRMKCPXXXXXXXXXXXXXXXXNCLG 371
           S+TS+ S+T T          S  +++ST+ +T      P                 C  
Sbjct: 148 SYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTPTPSYTSTPSYTSTTSYTCTT 207

Query: 372 GHERPSVRSLLSMSNSTAPY--LCPETASSAKKSNPSLTKTRS 494
            +   +  +  +   ST  Y      T++++  SNPS T T S
Sbjct: 208 SYTSTTSYTCTTSYTSTTSYTPTTSYTSTTSYTSNPSYTPTPS 250


>SB_2054| Best HMM Match : DUF1547 (HMM E-Value=8)
          Length = 192

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -2

Query: 352 DKVLEEVHSILD--DDGHFILNLVCRDVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFA 179
           + +L+   SI+D  D     + L+ + +EL    L  L+ H+ + +       VNE   +
Sbjct: 13  ETLLDSTSSIIDHNDSLQDHVKLLAKRIEL----LKMLREHYSNSLEPNGQGVVNESSVS 68

Query: 178 TNSRKPYENDALETAVRSLNSAARSQNLVNV 86
            NS+  YE   +E A     SA   +N+ N+
Sbjct: 69  DNSKSRYEEVDIEPAETKNESALVDENVQNL 99


>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 399 LLSMSNSTAPYLCPETASSAKKSNPSLTKTRSLSSS 506
           LL  SN T+P LCP+T S+  ++ P  T   S +++
Sbjct: 348 LLHHSNGTSPALCPKTPST-NRTTPDETSLHSTTAT 382


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 214  KLYEEVNEIIFATNSRKPYENDALETAVRSLNSAARSQNLVN-VKCVDIK 68
            K+  +VN+I+   ++   + N A +TA   +N A R+QN  N +K +DI+
Sbjct: 1231 KVAVKVNDILLNLDNIPQHANRARKTADDIINFADRAQNFKNEIKKLDIR 1280


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -2

Query: 307 HFILN-LVCRDVELQASMLLTLKRHFKHLVSVKLY-EEV-NEIIFATNSR 167
           H +LN ++C + E  A   LT   + +HL+ +K Y E+V NE IF    R
Sbjct: 527 HQVLNKMLCEEYEKIAEKALTSPANTEHLMELKNYIEQVENETIFDLEKR 576


>SB_45657| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=6.4)
          Length = 142

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 387 SVRSLLSMSNSTAPYLCPETASSAKKSNPSLTKTRSLSSSFKS 515
           S+  ++ ++ +T PY    ++SS+  S+ S + + S SSS  S
Sbjct: 96  SITVIIIITTTTTPYTSSSSSSSSSSSSSSSSSSSSSSSSLTS 138


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 504 WMI-NCGF*SRTDWISWRRKLFLDTNMVQYCSTWTARIARSASRVL 370
           WM+ NC    R +++   RK ++  N+  YC T+T   +RS    L
Sbjct: 435 WMVSNCHSSERNNYVFELRK-YVTVNIYGYCGTYTCPKSRSCGEQL 479


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = -2

Query: 289  VCRDVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFATNSRKPYENDALETAVRSLNSAA 110
            V R  +++A   L L+R F H   V   +   EI+   N+ +  E+D  ET   SL+S A
Sbjct: 5008 VKRTGDVKAEHTLRLQRAFSHGSEVLSGQREQEIVIPINNDRIVEDD--ETFTVSLSSDA 5065

Query: 109  RS----QNLVNVKCVD---IKDFLQSINII 41
             +    +N   VK +D   +  F+Q+  ++
Sbjct: 5066 PTVTFKKNSATVKILDDDAVIGFVQTFKVV 5095


>SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = -2

Query: 421 VLFDMDSKDRTLGLSCPPK--QFLEDKVLEEVHSILDDDGHFILNLVCRDVELQAS-MLL 251
           +L   D  D T    C  +  QFL+DK+L  V     DDG  +L ++      Q+   ++
Sbjct: 46  ILPSTDEPDATKNEECYAELIQFLDDKILSLVMREATDDGRKVLKILREFYASQSEPRII 105

Query: 250 TLKRHFKHLVSVKLYEEVNEIIFATNSRKPYENDALETAV 131
           TL   +  L S+++     + I A  + K    D L  A+
Sbjct: 106 TL---YTELTSLEMGVNETKAITALRNAKETLCDGLIIAM 142


>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = -2

Query: 364 QFLEDKVLEEVHSILDDDGHFILNLVCRDVELQASMLLTLKRHFKHLVSVKLYEEVNEII 185
           +F  DK L E+   +  DG   L  +   V+        LKRH +HLVS K  E+++E+ 
Sbjct: 132 EFAHDK-LHEIVRRMHRDGENDLEKIL--VQAFEECDTELKRHLEHLVSEK-GEDLSELS 187

Query: 184 FATNSRKPYENDALETAVRS 125
             T +      D  + A+ S
Sbjct: 188 SGTTATVVLLRDGTDLAIAS 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,654,979
Number of Sequences: 59808
Number of extensions: 465457
Number of successful extensions: 1370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)