Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21r
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    86   2e-17
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    78   7e-15
U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein...    30   1.5  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    29   4.5  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical p...    28   7.9  

>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
 Frame = -2

Query: 637 VAVLGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDFL 458
           +AVLGLGGG L  +L R  +  +VTAVELDP +L++A  HF                   
Sbjct: 460 MAVLGLGGGLLTAYLVRHFKKAHVTAVELDPEVLKIANSHFSFPHSDARIDVVIQDALIH 519

Query: 457 AEEAVSG---HKYGAVLFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFILNLV 287
            +E        KY  +  D+ S  +   L CPP  FL  + L  + + + + G   LNLV
Sbjct: 520 LQETAKKPEEEKYDVIFVDV-SGSQNAALQCPPSAFLTPEALGNMKNSVKEQGMISLNLV 578

Query: 286 CRDVELQASMLLTLKRHFKHLVSVKLYEEVNEIIFATNSRK 164
            RD E   S+   +  +F  L +V  +E+VNEII    + K
Sbjct: 579 TRDSEFGKSIKKNIAEYFPTLYTVLSFEDVNEIIIGLKTPK 619


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
 Frame = -2

Query: 628 LGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAEE 449
           +GLGGGSL MFL +    LN+T VELDP ++ +A + F                 F+ E 
Sbjct: 182 IGLGGGSLDMFLHQLNPKLNITVVELDPVVVGIARKWFNVVNDNTRRTITADGLKFIKEA 241

Query: 448 AVSGHKYGAVLFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDVEL 269
             +G  Y  V   +D+ D +  + CP K F   +    + SIL   G  I+N++ ++ + 
Sbjct: 242 KKNGELYEVVF--LDACDNSKIIPCPSKIFRNPETFSTLSSILSSTGALIVNILPQNDDT 299

Query: 268 QASMLLT--LKRHFKHLVSVKLYEEVNEIIFATNSRKPYENDALETAVRSLNSAARSQNL 95
              + +   L +HF   + V + +EVN I   T         A   +  +++   R  N 
Sbjct: 300 AGVIQIVEDLSQHFGSCIKVSITDEVNVIAICT-------KQAFTDSTSNVDFLKRRANA 352

Query: 94  VNVKCVDIKDFLQSINI 44
           V ++ + ++D L++I I
Sbjct: 353 VTMR-LGLQDVLKTIKI 368


>U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein
           1.0, isoform c protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 704 LRAHISVPFLHVRGSAAVQVQPRRGPWARRG*SLYV 597
           LR  + V FLHVRG A +    +    AR+G  +++
Sbjct: 213 LRQKLKVKFLHVRGHAGIDGNEKADELARKGAQMFI 248


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 242 ETLQASSVGETVRGSERNNFRYKQQKAVRERRSGNSCEVVELGGEKSKFSERQ 84
           E  + S   ETV  +  N   Y ++K+V  + S  +  V  LG   SKF++ Q
Sbjct: 620 EDKETSQPSETVETAPANGNDYDEEKSVENKVSTETDAVPNLGEYGSKFAKVQ 672


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +2

Query: 488 PQFIIQFQVEVLCGDLKHRGVQLHGGHVEVLPASPQEHTETTPAEPKDRDVAGLAQLHSH 667
           P   I+    +L   + H  ++ H  H  + P  PQ+ +   PA+P  + +  L   +  
Sbjct: 179 PYLDIEQLQPILLTSISHH-LKQHRPHKSLSPPPPQKISTEIPAKPAQKSIKSLNSFNLM 237

Query: 668 AHEGMVQRYVPVVYDKFRF 724
              G +Q+    + +K +F
Sbjct: 238 PRIGKLQQLDAQIAEKQKF 256


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 408 MSNSTAPYLCPETASSAKKSNPSLTKTRSLSSSFKS 515
           ++NST+  + P+TA S K     L K++ L+   KS
Sbjct: 291 LNNSTSTSVIPDTAVSRKPKGKGLKKSKKLNQKPKS 326


>Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical
           protein K04G2.7 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 569 VEVLPASPQEHTETTPAEPKDRDVAGLA 652
           VE+ P SP+E+T +TP    + D+   A
Sbjct: 191 VELKPRSPEENTRSTPQTTSNEDIKSSA 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,616,792
Number of Sequences: 27780
Number of extensions: 343291
Number of successful extensions: 1241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)