Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21r
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31740.1 68415.m03876 expressed protein                             77   1e-14
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin...    62   4e-10
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat...    27   0.54 
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   3.2  
At4g13330.1 68417.m02083 expressed protein                             29   4.2  
At3g54510.1 68416.m06032 early-responsive to dehydration protein...    29   4.2  
At5g06050.1 68418.m00670 dehydration-responsive protein-related ...    28   7.3  

>At2g31740.1 68415.m03876 expressed protein
          Length = 760

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
 Frame = -2

Query: 631  VLGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDFLAE 452
            V+GLG G L MFL  C    ++ AVELDP ML V   +F                 F+ +
Sbjct: 540  VIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLSVGKDYFGFTQNDRLKVHIADGIKFIRD 599

Query: 451  ------------------EAVSGHKYGAV-----LFDMDSKDRTLGLSCPPKQFLEDKVL 341
                              ++ + +  G +     + D+DS D + GL+CP   F+E+  L
Sbjct: 600  ITNSEASSEESSNIGSNGDSTTHNTQGGICPDILIIDVDSADSSGGLTCPASDFIEETFL 659

Query: 340  EEVHSILDDDGHFILNLVCRDVELQASMLLTLKRHFKHLVSVKLYEE--VNEIIFATNSR 167
              V   L   G FI+NLV R   ++  ++  +K+ F HL  ++L EE  VN ++F   S 
Sbjct: 660  LSVKQALPQHGLFIVNLVTRSQSVKDMVVSRMKKVFDHLFGLQLEEEDDVNVVLFGLCSE 719

Query: 166  KPY-ENDALETAV 131
                END  E+AV
Sbjct: 720  SVISENDIPESAV 732


>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
           aminopropyltransferase-related contains weak similarity
           to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
           [Hyoscyamus niger]
          Length = 434

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
 Frame = -2

Query: 628 LGLGGGSLCMFLRRCREDLNVTAVELDPAMLEVATQHFXXXXXXXXXXXXXXXXDF--LA 455
           +G+GGG L  FLR  +    VT VE+DP +L +A Q+F                    L+
Sbjct: 255 IGVGGGGLLSFLR-LQLGFEVTGVEIDPEVLRIARQYFGLEESLARVHVEDGIEFLKRLS 313

Query: 454 EEAVSGHKYGAVLFDMDSKDRTLGLSCPPKQFLEDKVLEEVHSILDDDGHFILNLVCRDV 275
           +      ++  ++ D+DS D   G++ PP +F+   VL    ++L   G FI+N++  + 
Sbjct: 314 KSCDDDARFDVLMVDLDSTDPIHGMTAPPVEFVAKDVLLAARTVLVPSGVFIINVIPPNK 373

Query: 274 ELQASMLLTLKRHFKHLVSVKLYEEVNEIIFAT 176
                +    +  F  L  + +    N ++ AT
Sbjct: 374 TFYQELQDQFRHVFAELYEIDVGNGENFVLIAT 406


>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2138

 Score = 26.6 bits (56), Expect(2) = 0.54
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 77  NAFDVH*ILTSRRRVQRPHSCFQSVVLVR 163
           NA + +  + S +R QRP  C  SVV +R
Sbjct: 160 NALEAYESILSGKREQRPQDCLDSVVDLR 188



 Score = 23.4 bits (48), Expect(2) = 0.54
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   IRYTFKHNYTLRNNINGLQKIFYINAFD 88
           I+   K +  L+N+++GLQK +   +FD
Sbjct: 109 IQIVHKEDLYLKNHLSGLQKKYLKVSFD 136


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 177 VAKIISFTSSYSFTDTRCLKCLLRV-RSIEAWSSTS 281
           +AKI SF +S S     CL CL R+ R+   WS TS
Sbjct: 70  LAKIQSFLASSSSGAVSCLICLERIKRTDPTWSCTS 105


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 649 KSSHVAVLGLGGGSLCMFLRRCREDLNVTAVELDPAML 536
           K   V  +G GGGSL +F+ +      V  VELDP ++
Sbjct: 184 KQMRVLCIGHGGGSLPLFIAKHILGAVVDIVELDPLVI 221


>At3g54510.1 68416.m06032 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 617

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 512 VEVLCGDLKHRGVQLHGG-HVEVLPASPQEHTETTPAEPKDRDVAGLAQLHSHAHEGMVQ 688
           +E L G  K    +L    H E+L    QEH + + +E K R++  +   H  +   + +
Sbjct: 139 LEYLLGKQKKLKKELEDKRHTEILSNGSQEHKQISTSEEKLREITHMI-YHLQSETMLRE 197

Query: 689 RYVPVVYDKFR 721
           + +PV +  F+
Sbjct: 198 KELPVAFVTFK 208


>At5g06050.1 68418.m00670 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410;  contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 682

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 222 TRCLKCLLRVRSIEAWSSTSRHTRFRMKCP 311
           T  + CL  V +I+  +ST+R  RF   CP
Sbjct: 157 TEYIPCLDNVEAIKRLNSTARGERFERNCP 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,689
Number of Sequences: 28952
Number of extensions: 317204
Number of successful extensions: 1136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)