Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   3.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   6.4  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.5  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 199 VRDRRDYIITSENIFDSEEKSRESEWLFGTAAGRRQLQD 315
           V    D  I S+  FD E++ R ++W F  +   +  +D
Sbjct: 57  VNSEDDEEIDSDEAFDEEDEKRFADWSFNASKSGKSNKD 95


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 108 FTHTFFFEIPNVFFSLCETFFLLS 37
           FTH       N+  SLC T F+LS
Sbjct: 449 FTHCLVDSFENISHSLCTTEFILS 472


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/96 (22%), Positives = 38/96 (39%)
 Frame = -2

Query: 552 SFHVDVLHDVVPGQLR*ALVNLHPTPHVAAYRQEWYLSAESIRYEHLG*MR*FLFDGVET 373
           S H+  + D V   +  +L +  P P     R+      + + Y  +  +   LFD    
Sbjct: 289 SVHIPGVGDFVTSDVS-SLEDPCPPPDADKVRRRRLSEKQKLIYGPMADIGGILFDKDRV 347

Query: 372 GVVVASSEHGHHEPTEPGRVLELAAPCCRAEQPLGL 265
            + V +S     E +E G    +      A+QPLG+
Sbjct: 348 YIEVPTSNFSKDENSEAGFGERMVMQLQEAQQPLGV 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,843
Number of Sequences: 5004
Number of extensions: 45967
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)