Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p21f
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329... 52 4e-07
02_02_0495 + 10954305-10954349,10954660-10955079 35 0.057
01_02_0078 - 10894871-10895841,10897268-10898426 32 0.40
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479... 29 2.8
02_04_0471 + 23192001-23192102,23192229-23192356,23192440-231931... 29 2.8
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 29 3.7
04_04_1682 + 35332907-35333720,35334583-35335202 28 5.0
01_05_0602 + 23577328-23579805 28 5.0
04_03_0735 + 19141038-19143227 28 6.5
03_02_0944 - 12603801-12604919 28 6.5
11_06_0160 - 20794974-20795977,20796241-20796295 27 8.7
11_01_0430 + 3294482-3295299,3296038-3296386 27 8.7
06_03_0837 + 25261890-25261923,25262135-25262186,25262410-252626... 27 8.7
05_03_0555 + 15425486-15426856 27 8.7
01_01_0752 - 5808798-5810183 27 8.7
>04_03_0669 +
18531419-18531820,18532589-18532690,18532882-18532948,
18533530-18533708,18533792-18534052,18535324-18535407,
18535517-18535564,18535654-18535718,18536849-18536897,
18538132-18538372,18539623-18539744,18539942-18540022,
18540094-18540168,18540408-18540550,18540662-18540812,
18540915-18541097
Length = 750
Score = 52.0 bits (119), Expect = 4e-07
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Frame = +1
Query: 256 KSRESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLDAVKEELAHSAKMLIPNG- 432
K R EWLF + G+ + +SA+ RL++ L H + +D +K +L+ K L P
Sbjct: 337 KVRAHEWLFASEEGQWHVVESAKAARLIMVFLDSRHANADMDVIKNDLSPLVKDLEPGNP 396
Query: 433 -FSGQIPFLSIGSDVGRRVKVHEGSSKLSGD-------YXXXXXXXXGHTH---RRLVFL 579
+IPF+ G V +R + E +S+++G Y T RRL+F
Sbjct: 397 EEEARIPFMMAGDGVKQREILQEVTSEITGPMVVEDVVYENNDEDQSSMTEKMFRRLIFK 456
Query: 580 DNQFLVQS 603
N LVQS
Sbjct: 457 RNSGLVQS 464
>02_02_0495 + 10954305-10954349,10954660-10955079
Length = 154
Score = 34.7 bits (76), Expect = 0.057
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 287 RQQGAASSRTRPGSV-GSWWPCSDEATTTPVSTPSKRN*RIQPRCSYRMDSADRY-HSCR 460
R++ AS+ + GS G WPC++ AT P S ++ RIQPR A+ R
Sbjct: 61 RKKTPASAPSTMGSNDGDHWPCTETATAGPESLRRRQRLRIQPREVEGSGGAEEMPEERR 120
Query: 461 *AATWGVG*RFTRAHRSCPGTTSWR 535
T GV AH + G WR
Sbjct: 121 EMVTGGV----EEAHPASRGGQEWR 141
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 246 QRRKIERVRVAVRHGSRAPPAPGLGPVRSARGGR 347
+RR+I R R S PP+P LG RSA GGR
Sbjct: 628 RRRQIRRCRHRYSPPSLDPPSPELGRHRSAAGGR 661
>12_01_0588 +
4795620-4796093,4796124-4797476,4797575-4797827,
4797989-4798108,4798542-4798564,4798734-4798841
Length = 776
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 313 DSARFGRLVVAVLRRGHHYSSLDAV 387
DS R GRL+ A+L GH Y LD V
Sbjct: 380 DSMRLGRLLRALLVSGHCYGPLDPV 404
>02_04_0471 +
23192001-23192102,23192229-23192356,23192440-23193108,
23193900-23194086
Length = 361
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -2
Query: 366 VVASSEHGHHEPTEP---GRVLELAAPCCRAEQPLGLSRFFFA 247
V A + HG P P G+ +A+PC L L+R FFA
Sbjct: 217 VFARAAHGSPPPLPPPRTGQCCRMASPCAHRRGLLQLARHFFA 259
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 262 RESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLD 381
RES F A R+ +AR LV AVLRRG H + D
Sbjct: 834 RESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRD 873
>04_04_1682 + 35332907-35333720,35334583-35335202
Length = 477
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 279 VRHGSRAPPAPGLGPVRSARGGRA 350
+RHG R PPAPG G A GRA
Sbjct: 377 IRHGFR-PPAPGAGIRTMATSGRA 399
>01_05_0602 + 23577328-23579805
Length = 825
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 406 SAKMLIPNGFS--GQIPFLSIGSDVGRRVKVHEGSSKLSG 519
S + ++PNGF+ + ++GSD+G +VH + KL G
Sbjct: 153 SEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEG 192
>04_03_0735 + 19141038-19143227
Length = 729
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 248 AKKNRESPSGCSARQQGAASSRTRPGSVGSWW 343
A+KN + + +A AA + TRP V ++W
Sbjct: 149 ARKNAAAAAAAAAAAAAAAEATTRPAGVDTFW 180
>03_02_0944 - 12603801-12604919
Length = 372
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 479 RPTSLPIDKNGICPLNPFGMSILAEC 402
+P +L +D+N ++ FG+S LAEC
Sbjct: 58 KPENLLLDENRNLKISDFGLSALAEC 83
>11_06_0160 - 20794974-20795977,20796241-20796295
Length = 352
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 281 SARQQGAASSRTRPGSVGSWWPCSDEATTTPVSTPSKRN*RIQPR--CSYRMDSADRYHS 454
SAR + A R P G W C ATTT +S PS R + R R+ +A R +
Sbjct: 261 SARGEEVAPLRQPPPRQGLWI-CDSCATTTMMSHPSFRFLSVSGREVAWIRVKTASRSST 319
Query: 455 C 457
C
Sbjct: 320 C 320
>11_01_0430 + 3294482-3295299,3296038-3296386
Length = 388
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 238 IFDSEEKSRESEWLFGTAAGRR-QLQDSA--RFGRLVVAVLRRGHHYSSLDAVKEELAHS 408
+++ E+ WL+G AAG QL A R R V A L HH + + ++ +
Sbjct: 175 VYELLERGSLDAWLYGDAAGAAGQLPWPARLRIARGVAAALAFLHHGNETAILHRDI-KA 233
Query: 409 AKMLIPNGFSGQI 447
+ +L+ GF ++
Sbjct: 234 SNVLLDEGFEAKL 246
>06_03_0837 +
25261890-25261923,25262135-25262186,25262410-25262645,
25263091-25263158,25263176-25263380,25263435-25263785,
25264566-25264633,25264736-25264797,25265615-25265708
Length = 389
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 217 YIITSENIFDSEEKSRESEWLFGTAAGRRQLQDSARFGRL--VVAVLRRGHHYSSLDAVK 390
Y +T EN F S + R + G +G QL+ AR GR + ++LRR + AV+
Sbjct: 195 YDLTEEN-FRSHVEERGGTYEHGGGSGSAQLE--ARKGRSNPITSMLRRATSHRESPAVR 251
Query: 391 EELAHSAK 414
+ SAK
Sbjct: 252 DYNLASAK 259
>05_03_0555 + 15425486-15426856
Length = 456
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 479 RPTSLPIDKNGICPLNPFGMSILAE 405
+P +L +D+NG + FG+S LAE
Sbjct: 138 KPENLLVDENGNLKITDFGLSALAE 162
>01_01_0752 - 5808798-5810183
Length = 461
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 479 RPTSLPIDKNGICPLNPFGMSILAEC 402
+P +L +D+NG ++ FG+S EC
Sbjct: 136 KPENLLVDENGNLKVSDFGLSAFKEC 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,288
Number of Sequences: 37544
Number of extensions: 312574
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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