Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p21f
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1) 109 2e-24
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0) 31 0.95
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40) 30 1.7
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 28 5.1
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 28 5.1
SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
Length = 627
Score = 109 bits (261), Expect = 2e-24
Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Frame = +1
Query: 256 KSRESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLDAVKEELAHSAKMLIPNGF 435
+ RE+EWLF + G Q+ A + RLVV L RGH Y+S+D +KEEL+ L P G
Sbjct: 259 QGRETEWLFSSDDGLAQISSDAGYQRLVVVSLNRGHKYTSMDHIKEELSSKVMDLAPEGL 318
Query: 436 SG--QIPFLSIGSDVGRRVKVHEGSSKLSGDYXXXXXXXXGHTHRRLVFLDNQFLVQS 603
+ ++PFLS+G D+G R VHEGSS LSGDY T RRLVFL N +QS
Sbjct: 319 TDKTKVPFLSVGGDIGIRKTVHEGSSSLSGDYIVEDITIGEDTFRRLVFLINPHGIQS 376
>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 31.9 bits (69), Expect = 0.41
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 49 KSFT*RKKNIRNFEKKSVCKQIRNFEKNIYIKGSNFF*IYSPPKFTSVSSVRDRRDYIIT 228
K FT R N++ + VCK + E+ ++ + S +SVS R D I
Sbjct: 3 KHFT-RNFNLKRHIENGVCKNNADLEEESDTDTASN--VKSDEDMSSVSGTESRIDSEIE 59
Query: 229 SEN-IFDSEEKSRESE 273
SE+ +DSEEK ESE
Sbjct: 60 SEDGDYDSEEKESESE 75
>SB_5308| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 608
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -3
Query: 446 ICPLNPFGMSILAECASSSLTASRLE*W----WPRLSTATTSRPNRAESWSWRRP---AA 288
IC LN F + +C+ SL A ++ + WP TT R W+W +P AA
Sbjct: 91 ICQLNGFFNIVFTQCSLLSLIAIGVKKYYAIVWPLRRLMTTRRTVGLLCWTWFQPVVIAA 150
Query: 287 VP 282
VP
Sbjct: 151 VP 152
>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
Length = 935
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -2
Query: 297 PCCRAEQPLGLSRFFFAVKYIFTGYYIVSPITYRAYTCEFRG*IYLKKIRSLNIYIFFEI 118
PC R L L R + ++F+ Y V TY F + L ++ + ++FF +
Sbjct: 319 PCTRFTLTLLLYRVPGSHSHLFSTVYQVHTHTYSLPCTRFTLTLILYRVPGSHSHLFFTV 378
Query: 117 PNLFTHTFFFEIPNVFFSLCETF 49
+ THT+ +P + L F
Sbjct: 379 YQVHTHTYSL-VPGSYSRLTVLF 400
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 416 CSYRMDSADRYHSCR*AATWGVG*RFTRAHRSCPGTTSWRTSTWKDTPTGD*CSSTISFW 595
C +R+D H+C+ W + R H +C T WR D T C ST +
Sbjct: 81 CPWRLDRQADIHTCKSTCRWRLD-RQADIH-TCKSTCRWRLDRQADIHT---CKSTCRWR 135
Query: 596 FSR 604
R
Sbjct: 136 LDR 138
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 416 CSYRMDSADRYHSCR*AATWGVG*RFTRAHRSCPGTTSWRTSTWKDTPT 562
C +R+D H+C+ W + R HR C T W+ D T
Sbjct: 149 CRWRLDRQADIHTCKSTCRWRIN-RQADIHR-CKSTCRWQLDRQADIHT 195
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 260 RESPSGCSARQQGAASSRTRPGSVGSWWPCSDEATTTPVSTPSKRN*RIQPRCSYRMDS 436
RESP+ C+ R + SSR S S P ++ +PS RN R P DS
Sbjct: 144 RESPTSCNVRD--SPSSRNPRDSPASRNPRDSPSSCNVRDSPSSRNPRDSPASRNPRDS 200
>SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +2
Query: 311 RTRPGSVGSWWPCSDEA---TTTP 373
R PG+ GSWWP S ++ TTP
Sbjct: 350 RKTPGTTGSWWPPSPDSIPDETTP 373
>SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 49 KSFT*RKKNIRNFEKKSVCKQIRNFEKNIYIKGSNFF*IYSPPKFTSVSSVRDRRDYIIT 228
K FT R N++ + VCK + E+ ++ + +SVS R D
Sbjct: 11 KHFT-RNFNLKRHIENGVCKNNADLEEESDTDAASNV---KSDEMSSVSGTESRIDSESE 66
Query: 229 SEN-IFDSEEKSRESE 273
SE+ +DSEEK ESE
Sbjct: 67 SEDGDYDSEEKESESE 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,534
Number of Sequences: 59808
Number of extensions: 352442
Number of successful extensions: 3082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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