Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21f
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    64   6e-11
Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    28   5.9  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    28   5.9  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    28   5.9  
L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical pr...    27   7.8  
L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = +1

Query: 262 RESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHY-SSLDAVKEELAHSAKML-IPNGF 435
           R+SEWLF +  GR+ L+      RL +  L R   Y   +D VK ++ H   ML +    
Sbjct: 298 RDSEWLFASPKGRKALRVQCGRERLAIVFLNRNQKYEKGMDGVKSDIGHFVGMLDVRQDN 357

Query: 436 SGQIPFLSIGS-DVGRRVKVHEGSSKLSGDYXXXXXXXXGHTHRRLVFLDNQFLVQS 603
           +G    LSIG  DV R V    G S ++G +        G+  RRLVFL+   LVQS
Sbjct: 358 TGNYEILSIGGVDVKRTVST--GRSDINGGWSVEEVTVEGNQTRRLVFLNTMNLVQS 412


>Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical
           protein R08H2.5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -2

Query: 123 EIPNLFTHTFFFEIPNVFFSLCETFFLLSTSTCQCV----WTSIP 1
           +IP L  H F  ++  V  +LC  +  L  S   CV    W  +P
Sbjct: 63  KIPLLINHFFCAQLDVVLCTLCPLYIFLPMSAVSCVGLLSWLGVP 107


>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
           protein R05D3.11 protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 223 ITSENIFDSEEKSRESEWLFGTAAGRRQLQDS 318
           +    +  S +  +++ WL GTAAGRR+   S
Sbjct: 509 VACRQVISSSQFGKKTIWLTGTAAGRRRAHRS 540


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = +1

Query: 214 DYIITSENIFDSEEKSRESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLDAVKE 393
           DYII   N+  S EK R  +       G+R   +  +  RL+  V         L    E
Sbjct: 201 DYIIPGFNVLKSAEKVRGEQDDAHEEEGKRMTAEFLKSSRLIDEVKESARQRIELPTAYE 260

Query: 394 ELAHSAKML 420
            LA + K +
Sbjct: 261 HLADTFKRI 269


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = +1

Query: 214 DYIITSENIFDSEEKSRESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLDAVKE 393
           DYII   N+  S EK R  +       G+R   +  +  RL+  V         L    E
Sbjct: 201 DYIIPGFNVLKSAEKVRGEQDDAHEEEGKRMTAEFLKSSRLIDEVKESARQRIELPTAYE 260

Query: 394 ELAHSAKML 420
            LA + K +
Sbjct: 261 HLADTFKRI 269


>L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical
           protein ZC262.3a protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 263 ESPSGCSARQQGAASS-----RTRPGS-VGSWWPCSDEATTTPVSTPSKRN*RIQPRCSY 424
           E P+  S    G  S      R RP   +GS+ P +DE + T VS   K +  IQ   S 
Sbjct: 389 EKPTAISCFSYGVPSPKISWWRFRPAEKLGSYDPITDEISYTNVSETMKESYEIQSGGSL 448

Query: 425 RMDSADRYH 451
            + S +R H
Sbjct: 449 LIRSPNRSH 457


>L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical
           protein ZC262.3b protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 263 ESPSGCSARQQGAASS-----RTRPGS-VGSWWPCSDEATTTPVSTPSKRN*RIQPRCSY 424
           E P+  S    G  S      R RP   +GS+ P +DE + T VS   K +  IQ   S 
Sbjct: 389 EKPTAISCFSYGVPSPKISWWRFRPAEKLGSYDPITDEISYTNVSETMKESYEIQSGGSL 448

Query: 425 RMDSADRYH 451
            + S +R H
Sbjct: 449 LIRSPNRSH 457


>AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical
           protein M151.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 362 WPRLSTATTSRPNRAESWSWRRPAAVP 282
           WP+LS  TTS  N A++ S +  A +P
Sbjct: 10  WPQLSPLTTSSTNSAQAPSDQEEARIP 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,226
Number of Sequences: 27780
Number of extensions: 266040
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)