Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21f
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.3  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 283 GTAAGRRQLQDSARFGRLVV 342
           G  A RR L D ARF  LVV
Sbjct: 25  GYPARRRSLVDDARFETLVV 44


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 SENIFDSEEKSRESEWLF 282
           SEN F S+E SRE   +F
Sbjct: 635 SENNFASQELSREGRRIF 652


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 SENIFDSEEKSRESEWLF 282
           SEN F S+E SRE   +F
Sbjct: 603 SENNFASQELSREGRRIF 620


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 328 GRLVVAVLRRGHHYSSLDAVKEELAHSAKMLIP 426
           G+  V +LR     SSL+ +  ++ +   +L P
Sbjct: 75  GKTFVTILRNDGVPSSLNVISNKIGNGGPLLEP 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,308
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)