Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p21f
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31740.1 68415.m03876 expressed protein                             52   3e-07
At3g46260.1 68416.m05007 protein kinase-related contains low sim...    31   0.44 
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    29   2.4  
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin...    27   7.2  
At1g20860.1 68414.m02613 phosphate transporter family protein si...    27   7.2  
At5g61300.1 68418.m07692 expressed protein                             27   9.6  
At5g22240.1 68418.m02589 ovate family protein 60% similar to ova...    27   9.6  
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    27   9.6  
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter...    27   9.6  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    27   9.6  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    27   9.6  

>At2g31740.1 68415.m03876 expressed protein
          Length = 760

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +1

Query: 256 KSRESEWLFGTAAGRRQLQDSARFGRLVVAVLRRGHHYSSLDAVKEELAHSAKMLIP-NG 432
           K+R  EWLF +  G+ Q+ +S++  RL++  L   H  ++++ ++ +L+     L P N 
Sbjct: 329 KTRAHEWLFCSEEGQWQVVESSQAARLIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRND 388

Query: 433 FSGQIPFLSIGSDVGRRVKVHEGSSKLSG 519
              +IP++     + +R  VHE +S ++G
Sbjct: 389 DEARIPYMMASDGIKKRDTVHEVTSPMTG 417


>At3g46260.1 68416.m05007 protein kinase-related contains low
           similarity to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 434

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 166 YSPPKFTSVSSVRDRRDYIITSENIFDSEEKSRESEWLFGTA 291
           YSPP F  V   + R    +T +++F  EE    SE +F  A
Sbjct: 110 YSPPSFDVVYDGKHRNSIAMTVDSLFSDEETFHYSEVIFAPA 151


>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 385 VKEELAHSAKMLIPNGFSGQIPFLSIGSDVGRRVKVHEGSSKLSGDY 525
           +K EL    ++L+ N    Q+ FLS    V R V VHEG+ K  G Y
Sbjct: 783 IKRELGQKTRVLVTN----QLHFLS---QVDRIVLVHEGTVKEEGTY 822


>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
           aminopropyltransferase-related contains weak similarity
           to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
           [Hyoscyamus niger]
          Length = 434

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 KSRESEWLFGTAAGRRQL 309
           K RES+W+F T +G+ QL
Sbjct: 57  KHRESDWIFSTESGQLQL 74


>At1g20860.1 68414.m02613 phosphate transporter family protein
           similar to phosphate transporter [Catharanthus roseus]
           GI:2208908, inorganic phosphate transporter 1 [Solanum
           tuberosum] GI:1420871; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 534

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 SDEATTTPVSTPSKRN*RIQPRCSYRMDSADRY 448
           SDEATT P   P   + ++  RC +R+   D +
Sbjct: 255 SDEATTDPPPPPPPPSYKLFSRCFFRLHGRDLF 287


>At5g61300.1 68418.m07692 expressed protein
          Length = 557

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 366 VVASSEHGHHEPTEPGRVLELAAPC 292
           +V++S HG H  +EP R L LA PC
Sbjct: 261 LVSASLHGKHG-SEPSRSLVLALPC 284


>At5g22240.1 68418.m02589 ovate family protein 60% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 196

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 393 LFDGVETGVVVASSEHGHHEPTEPGRVLELAAPCCRAEQPLGLSR 259
           +F     G  V  S H H+ P  P     L +PC + ++ + +++
Sbjct: 58  IFMACGCGSTVPPSSHSHYTPGPPVSPTVLRSPCPKIDESVAMAK 102


>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 KKNRESPSGCSARQQGAASSRTR 319
           KK R SPS  SA    AAS+RT+
Sbjct: 63  KKTRGSPSSSSATTTSAASNRTK 85


>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
           (MRP1) identical to glutathione S-conjugate transporting
           ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
          Length = 1622

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 385 VKEELAHSAKMLIPNGFSGQIPFLSIGSDVGRRVKVHEGSSKLSGDY 525
           +K EL  + ++L+ N    Q+ FLS    V + + VHEG+ K  G Y
Sbjct: 783 IKRELGQTTRVLVTN----QLHFLS---QVDKILLVHEGTVKEEGTY 822


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 276 AVRHGSRAPPAPGLGPVRSARGGRA 350
           +V  GSR+PP  G  P   AR GR+
Sbjct: 53  SVSSGSRSPPRRGKSPAGPARRGRS 77


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 276 AVRHGSRAPPAPGLGPVRSARGGRA 350
           +V  GSR+PP  G  P   AR GR+
Sbjct: 53  SVSSGSRSPPRRGKSPAGPARRGRS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,554,348
Number of Sequences: 28952
Number of extensions: 240806
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)