Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13r
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0849 - 11768191-11771412                                         29   4.0  
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358...    29   5.3  
03_02_0816 + 11487811-11488708,11488835-11489235                       29   5.3  
07_03_0225 - 15390364-15390924,15391231-15391288,15392160-153922...    28   9.2  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   9.2  

>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 328  NIAAIRTAYIEDAPPTPVH---TALSNLAAYLDESGLDEYETWLRST 197
            N+ ++R   I D P   +    T L +  +YL  SG  + E+W R+T
Sbjct: 1012 NLGSLRCVEIHDIPNLRIDNTGTVLPDSVSYLTLSGCPDLESWCRNT 1058


>09_02_0625 +
           11334418-11334499,11335067-11335164,11335758-11335831,
           11335996-11336598,11336692-11337185,11338035-11338170,
           11338417-11338488,11338581-11338652,11339078-11339226,
           11340129-11340364,11340567-11340693,11341011-11341079,
           11341172-11341361,11341465-11341857,11342084-11342195
          Length = 968

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 245 VSSEIRQSCMHWSWWSVFNVCRSYSSNIVLHELENRVSVLLVTEQSVVEGSSFI 406
           V+ +IR     W+  ++ N   +Y+S  ++  + N VSV LV      EG+ FI
Sbjct: 199 VTFDIRIGLNFWNRLNIINATMTYTSEAIVVAIVNSVSVCLVDNG---EGTPFI 249


>03_02_0816 + 11487811-11488708,11488835-11489235
          Length = 432

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
 Frame = -2

Query: 379 LLGNQENANTVLQFVKNNIAAIRTAYIE-----DAPPTPVHTALSNLAAYLDESGLDEYE 215
           LLG  E  +  L+ ++  IAA+R A +      DAPPTP  T   +   + D+   D   
Sbjct: 171 LLGALEKCDEDLKTLRRIIAAVRAAEMRAAAASDAPPTPEATGKGSDNRWKDDGSRDVDP 230

Query: 214 TWLRSTQ-----TNIPQYNSALSAINSAR 143
           +   + Q      + P  +S L AI S R
Sbjct: 231 SPSPTPQKPRSEEHYPSPDSVLDAITSPR 259


>07_03_0225 -
           15390364-15390924,15391231-15391288,15392160-15392238,
           15392354-15393167
          Length = 503

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 346 LQFVKNNIAAIRTAYIEDAPPTPVHTALSNLAAYLDESGLDEYE 215
           LQFV NN+ A++  Y+ED     +   LS LA   +++G D  E
Sbjct: 398 LQFV-NNLNALKWLYLEDETMDCIPMWLSRLAESGEQAGEDGLE 440


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
 Frame = +3

Query: 366  WLPSRA*LKEVALSCDLTSLVKVNCKYRVNN*ESLEAPNPLSISS*SLAKFDCRKRFSKY 545
            WLP+   + +  ++ D   +   N  + +   E     NP SIS   L +  C K    Y
Sbjct: 1084 WLPNDDDVPDKLITLDDNIMSFHNLSF-LTGLEIYGFQNPTSISFHGLRQLRCLKTLKIY 1142

Query: 546  SKSELSPSLMPVI*TLRRI*GLTH--LPLLISLNLS----YDSWMHFVCPRLQA 689
               +L PS +P   T   + G  H  LP L+ L++        W+  +   +QA
Sbjct: 1143 DCPKLLPSNVPSELTGEYMSGENHSALPSLVRLHIEKCGIMRKWLSLLLQHVQA 1196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,194
Number of Sequences: 37544
Number of extensions: 342122
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)