Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    62   9e-11
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    31   0.18 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   6.9  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   6.9  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   9.1  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 48/150 (32%), Positives = 69/150 (46%)
 Frame = +1

Query: 184 LPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSV 363
           LP+ VKP+ YD  L LY    T   F+Y G+  + ++ V E    I LH     IN + +
Sbjct: 20  LPKNVKPIHYD--LSLYPDLET---FTYGGKVVVTLD-VLEDSNSITLHG----IN-LRI 68

Query: 364 LTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIWR 543
           LT   A     ++  +  E  Y   +I L  P  V       +    T        G +R
Sbjct: 69  LT---AALEWGSQTVWASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYR 125

Query: 544 GWYIDNDGTERIYATTHFQPYNARQAFPCW 633
             Y+D+DG  +  ATT  +P +AR+AFPCW
Sbjct: 126 SSYVDSDGNTKYLATTQMEPTSARRAFPCW 155


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 385 FPVNTR-EPFTLEPQYHFLKINLNEPLV 465
           FP   +  PF LEPQ+H LK   ++P+V
Sbjct: 290 FPAREKISPFKLEPQFHHLKDKSDQPIV 317


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +1

Query: 118 HRDFEPI---PITDNTTRS--IEQVYRLPETVKPLEYD 216
           H  F P+   P+T    RS  I+QVYR P + K +EY+
Sbjct: 15  HELFHPLSRSPLTALRRRSEHIKQVYRCPISGKSVEYE 52


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +1

Query: 88  GLTSADHPAWHR--DFEPI--PITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDR 255
           GL S+ HP W R  + +PI     DN   ++E  + +  T K L   +YL +  A++  R
Sbjct: 291 GLDSSKHPRWDRVKNIDPIKFEFADNIKCALE-AWNM-NTNKWLRNYVYLRV--AKKGKR 346

Query: 256 PFSYDGRETIIIEAVAEGVT 315
           P       T  + A+  GV+
Sbjct: 347 PGFKSTLSTFTVSAMWHGVS 366


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 502 STMNEGPMKRGIWRGWYIDNDGTERIYATTHFQPYNARQ 618
           S +   P+KR  +  WY +N G     +     PY A Q
Sbjct: 319 SLLQTQPLKRKNYSPWYKNNFGASTPASRVSRNPYTAAQ 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,590
Number of Sequences: 5004
Number of extensions: 60863
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)