Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13f
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660...    47   1e-05
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    30   1.8  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    30   1.8  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    30   1.8  
06_01_0492 - 3531640-3531735,3531841-3531895,3532164-3532592,353...    28   5.4  
04_03_0048 + 10157468-10158017,10158426-10158655                       28   5.4  
06_03_0370 - 19978462-19978800,19982435-19982591,19982683-199829...    28   7.1  

>02_02_0080 +
           6598427-6598663,6599246-6599391,6599567-6599669,
           6600407-6600593,6600699-6600792,6601290-6601443,
           6601751-6601855,6601937-6602053,6602248-6602361,
           6602891-6603073,6603207-6603486,6603565-6603686,
           6603763-6603860,6603941-6604118,6604439-6604553,
           6604656-6604723,6604825-6604902,6604986-6605060,
           6605156-6605338
          Length = 878

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = +1

Query: 421 PQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIWRGWYIDNDGTERIYATTHFQ 600
           P+   L I  NE L VG+  +L I +  T+N+     G +R  Y + +G ++  A T F+
Sbjct: 90  PEDEILIIRFNEVLPVGEG-TLVIAFKGTLND--KMHGFYRSVY-ELNGEKKNMAVTQFE 145

Query: 601 PYNARQAFPCW 633
           P +AR+ FPCW
Sbjct: 146 PADARRCFPCW 156


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 253 RPFSYDGRETIIIE---AVAEGVTQIVLHSN---VDSINAVSVLTEGGAPFPVNTREPFT 414
           RP S  G+ET   E   ++  G  + +L SN    D+I     + +GGAPFP  +     
Sbjct: 198 RPTSSSGKETAQNEQGKSITAGPAEEILSSNSQSADNIKTDQHVYDGGAPFPGTSLPNKA 257

Query: 415 LEPQ 426
            +PQ
Sbjct: 258 QQPQ 261


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 211 YDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS-VLTEGGAP 384
           +D+Y+++   + T+  ++ +GR    ++ +      I +  N+D I  ++ +L  GG+P
Sbjct: 109 FDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVRNLDQILVMNGLLVPGGSP 167


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 115 WHRDFEPIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETI 285
           W +D  P P+  +    ++  Y  P+    L  DIY+ L  AE   RP S D  ETI
Sbjct: 211 WKKD-APSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRKRP-STDFMETI 265


>06_01_0492 -
           3531640-3531735,3531841-3531895,3532164-3532592,
           3532677-3532756
          Length = 219

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 633 PAWECLSRIIRLEMC-CRVDPFCTIVVDVPSPPNTPL 526
           PA   +   +R  +C    D  CT+  D+ SPP+ PL
Sbjct: 64  PAIAAVGGTLRFILCEWNADEMCTVHFDLTSPPDRPL 100


>04_03_0048 + 10157468-10158017,10158426-10158655
          Length = 259

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 522 NEEGYLEGMVHRQRWYRKDLRDN 590
           +  GY++ +V RQ W R+ LR N
Sbjct: 94  DSSGYIDALVTRQAWLRRRLRTN 116


>06_03_0370 -
           19978462-19978800,19982435-19982591,19982683-19982917,
           19983029-19983239,19985597-19985700,19985871-19985957,
           19986225-19986354
          Length = 420

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 FAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSIN 351
           F  RTD    +D R   IIE +A+G+  + LHS +  I+
Sbjct: 177 FGPRTDWSLYWD-RLFAIIEGIAQGIVYLHLHSGLKIIH 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,986
Number of Sequences: 37544
Number of extensions: 378840
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)