Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13f
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                71   1e-12
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 60   2e-09
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 43   2e-04
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                43   2e-04
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                37   0.012
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)            36   0.021
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 33   0.19 
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_32141| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 28   5.5  
SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   7.2  
SB_25170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)          27   9.6  

>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 46/154 (29%), Positives = 73/154 (47%)
 Frame = +1

Query: 172 QVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSIN 351
           Q  RLP +V P EY + L      + D  F++ G  ++ ++   E    I +H+    + 
Sbjct: 129 QKIRLPSSVTPEEYTVIL----RPKLDPDFTFSGNVSVRVKC-NEDTDYIFIHAKQMRLT 183

Query: 352 AVSVLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKR 531
              VL +G  P  +   E    E +     I +   L  G+ Y L I++++ + E     
Sbjct: 184 KFEVLNQGKEPLKI--METANCE-KLEMFSIKVKGGLKKGESYVLQIDFNAVLAE--KLT 238

Query: 532 GIWRGWYIDNDGTERIYATTHFQPYNARQAFPCW 633
           G ++  Y D DG  R  ATTHF+P +AR AFPC+
Sbjct: 239 GFYKSSYKDKDGNTRYLATTHFEPTDARAAFPCF 272


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%)
 Frame = +1

Query: 133 PIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGV 312
           P+P T  T        RLP+ V P+ Y++YL++   E       + G   I +  V +  
Sbjct: 226 PLPTTPGTEAWWN--VRLPKNVVPVHYNVYLNIILKE-----LRFTGTSEIHLN-VTQST 277

Query: 313 TQIVLHSNVDSINAVSVLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYI 492
             I++HS   ++ + SV+ + G    +  R  F  E    F  + +   L  G  Y + +
Sbjct: 278 DLILVHSARMNVTSGSVMNKAGDQQAIKKR--FWFEKN-QFTVLQMETALEPGP-YVVML 333

Query: 493 EYSSTMNEGPMKRGIWRGWYIDNDGTERIYATTHFQPYNARQAFPC 630
            + + +++     G++R  Y   DG     ATT FQP +AR+AFPC
Sbjct: 334 GFEAFLSD--QLNGLYRSQYTHKDGKNVTIATTQFQPTDARKAFPC 377


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
 Frame = +1

Query: 196 VKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSVLTEG 375
           +  +   ++ +L+     DR   + G+  I I  V +    I++H+   +++ + +  + 
Sbjct: 105 ITKINASLHYNLFLNVTLDRDH-FHGKVDIYIN-VFKATKIIIVHNRRLNVSDIDI-RKT 161

Query: 376 GAPFPVNTREPFTLEP-QYHFLKINLN-EPLVVGQKYSLYIEYSSTMNEGPMKRGIWRGW 549
           G+   +  R+ F  +  Q++ ++   + EP +    Y + I Y    ++G   RG +R  
Sbjct: 162 GSQGSLGIRQHFPFKKNQFYVMEAEQSLEPSL----YVVSISYKGFYSKG--LRGFYRSS 215

Query: 550 YIDNDGTERIYATTHFQPYNARQAFPCW 633
           +  N+G    +  T F+P  AR+AFPC+
Sbjct: 216 FTQNNGQRVYFVATQFEPVKAREAFPCF 243


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +1

Query: 394 NTREPFTLEPQYHFL----KINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIWRGWYIDN 561
           N RE   LE + HFL    + ++ E     +   + + Y      G    G++RG Y   
Sbjct: 66  NQREN-ELEVKRHFLHAPNQYHVTEVTSALKPSLITVTYEFVGAYGQSVLGLFRGTYKKA 124

Query: 562 DGTERIYATTHFQPYNARQAFPCW 633
           DGT+  +  T F+P+ AR AFPC+
Sbjct: 125 DGTDAYFVATQFEPHYARTAFPCF 148


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
 Frame = +1

Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
           RLP  V P+ YD++L       T     ++G   I+++ + E    I++H+N  +++  S
Sbjct: 94  RLPTNVIPVHYDLFLHPNLTTGT-----FEGEVEILVDVLQE-TEYILVHTNGMTVSKSS 147

Query: 361 V--LTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRG 534
           V   T+     P+  +E F  +  ++++ I ++E L VG +Y + ++Y +  +      G
Sbjct: 148 VHEATKESQKEPLAVKEMFEYKENFYYVFI-MSEKLSVG-RYIVRMDYRAPFSSE--LNG 203

Query: 535 IWRGWYID-------------NDGTERIY------------ATTHFQPYNARQAFPCW 633
            +   Y D             N G + I             ATT F+P +AR+A PC+
Sbjct: 204 FYLSTYKDKRVFPYAKHGDGHNQGFKAIVSKAAFKLRIPKLATTKFEPTDARKALPCF 261


>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
          Length = 302

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 31/135 (22%), Positives = 61/135 (45%)
 Frame = +1

Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
           RLP+ V P +Y + +    + +    F + G+  I I+ V +    IVLHS    I +  
Sbjct: 91  RLPKDVVPTKYTLTMHPVLSGK----FDFTGKAAIDIKVV-KNTKYIVLHSKKLKIKSYR 145

Query: 361 VLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIW 540
           ++ +      +       L  +   L +   + LV GQK+++ +E+S  ++      G +
Sbjct: 146 LVNDKKENVKIAR---MLLNEKLEQLLLEPKQGLVKGQKFTIKLEFSGELSN--KMAGFY 200

Query: 541 RGWYIDNDGTERIYA 585
           +  Y   +G  R++A
Sbjct: 201 KSSYKTRNGEVRVWA 215


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +1

Query: 106  HPAWHRDFEPIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETI 285
            +P+      PIP T  T       +RLP  V P  YD+YLD+   ++     +Y G   I
Sbjct: 1423 NPSPSASTNPIPTTPGTEAWWN--FRLPTNVIPNNYDLYLDVNMKKK-----NYTGSVNI 1475

Query: 286  IIEAVAEGVTQIVLH 330
            ++  V +    ++LH
Sbjct: 1476 LV-TVTQSTDLVILH 1489


>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +1

Query: 106 HPAWHRDFEPIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETI 285
           +P+      PIP T  T       +RLP  V P  YD+YLD+   ++     +Y G   I
Sbjct: 9   NPSPSASTNPIPTTPGTEAWWN--FRLPTNVIPNNYDLYLDVNMKKK-----NYTGSVNI 61

Query: 286 IIEAVAEGVTQIVLH 330
           ++  V +    ++LH
Sbjct: 62  LV-TVTQSTDLVILH 75


>SB_32141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 583 ATTHFQPYNARQAFPCW 633
           ATTHF+P +AR AFPC+
Sbjct: 43  ATTHFEPTDARAAFPCF 59


>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 462 KGFVQINF*EMILRLQCERLPCINWEWC 379
           KG+  IN  +++LR  C   PC+N   C
Sbjct: 496 KGYAGINCDKLVLRNPCHNHPCVNGGTC 523


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGR-ETIIIEAVAEGVTQIVLHSNVDSINAV 357
           R PE +KP+E D Y      E   R    +G  + I+ EA +E  T     S+  S N++
Sbjct: 646 RSPECIKPVEVDCYKPCLALEFL-RYMELNGEFQDIMAEARSENQTHTRSLSSSSSENSL 704

Query: 358 SV-LTEGGAPFPVNTREP 408
           S  +T+  +P  V    P
Sbjct: 705 SFKVTKSTSPITVTKATP 722


>SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 142 WGLVRNLCAMLGGQPMLGRKSPNTVVKAWTYLQITNM 32
           WG +   CA LG +  LGR+  N+ +  W  L + N+
Sbjct: 242 WGYIHLKCARLGLKCRLGRELRNSKINIW-LLNLENL 277


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
           RLP  V P+ YD++L       T     ++G   I+++ + E    I++H+N  +++  S
Sbjct: 69  RLPTNVIPVHYDLFLHPNLTTGT-----FEGEVEILVDVLQE-TEYILVHTNGMTVSKSS 122

Query: 361 V 363
           V
Sbjct: 123 V 123


>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 247 TDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSI 348
           T  P +Y+G +T+ ++A +  +  IVL+ + DS+
Sbjct: 55  TWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSV 88


>SB_25170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 178 YRLPETVKPLEYDIYLDLYFAERTDRPFSYDGR 276
           +RL E +K L +DI  D+   +  D+P  Y GR
Sbjct: 13  FRLYERLKQLVFDIVGDVLVQDVLDQPCQYGGR 45


>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 103 DHPAWHRDFEPIPITDNTTRSIEQVYRLPETVKP 204
           +HP+ H    P P+   ++ S+  ++ + E VKP
Sbjct: 562 EHPSAHHPQPPRPVKKESSSSMLMIFGIDEPVKP 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,679
Number of Sequences: 59808
Number of extensions: 452400
Number of successful extensions: 1333
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)