Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     27   0.15 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 507 NERRPNEEGYLEGMVHRQRWYRKDLRDNTFPAV 605
           +E  P E  Y EG  H   W+RK LR +  P++
Sbjct: 7   SEINPKEGLYDEGGKHTVHWFRKGLRLHDNPSL 39



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 422 GSSVKGSLVLTGNGAPPSVSTET 354
           G S+KG  V   N  PPS   ET
Sbjct: 515 GVSLKGETVGLLNALPPSSMKET 537


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 PFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSVLTE 372
           P  Y G +T+ + +    +  IVL++N D    V+++T+
Sbjct: 86  PDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK 124


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/85 (18%), Positives = 37/85 (43%)
 Frame = +1

Query: 115  WHRDFEPIPITDNTTRSIEQVYRLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIE 294
            W ++    P   N T++++++ R P+T++ +  +         R   P + D  +   + 
Sbjct: 875  WQKERTHRPTFANLTQTLDKLIRSPDTLRKIAQN---------RGTNPLAPDAVDLTQLT 925

Query: 295  AVAEGVTQIVLHSNVDSINAVSVLT 369
            +V+E +  I +    +S     V T
Sbjct: 926  SVSEWLASIKMSRYAESFERSGVTT 950


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 256 PFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSVLTE 372
           P  Y G E + + +    +  IVL++N D    V+++T+
Sbjct: 99  PEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTK 137


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 256 PFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSVLTE 372
           P  Y G   + + +    +  IVL++N D    V+ +T+
Sbjct: 86  PAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTK 124


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 357 FCANGRWRTIPS*YKGAFHTGASVSF 434
           F  NG  RTI     G  H GA V F
Sbjct: 868 FVLNGETRTINCEIGGLQHPGAVVWF 893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,835
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)