Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p13f
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    44   1e-04
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    29   3.4  
At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    29   3.4  
At1g48270.1 68414.m05392 G protein coupled receptor-related iden...    27   7.8  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 40/151 (26%), Positives = 68/151 (45%)
 Frame = +1

Query: 181 RLPETVKPLEYDIYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVS 360
           RLP+   P  YD+ L+      T     + G   I ++ VA+    IVL++   S+N  S
Sbjct: 9   RLPKFAVPKRYDLRLNPDLIACT-----FTGTVAIDLDIVAD-TRFIVLNAADLSVNDAS 62

Query: 361 VLTEGGAPFPVNTREPFTLEPQYHFLKINLNEPLVVGQKYSLYIEYSSTMNEGPMKRGIW 540
           V     +           L  +   L +   E L  G    L + ++  +N+    +G +
Sbjct: 63  VSFTPPSSSKALAAPKVVLFEEDEILVLEFGEILPHGVGV-LKLGFNGVLND--KMKGFY 119

Query: 541 RGWYIDNDGTERIYATTHFQPYNARQAFPCW 633
           R  Y +++G ++  A T F+P +AR+ FPCW
Sbjct: 120 RSTY-EHNGEKKNMAVTQFEPADARRCFPCW 149


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -3

Query: 137 IGSKSLCHAGWSADVRPKIAKHSSKSLDIFADNKYV 30
           +GS S CH  W  D R KIAK  ++ L    D KYV
Sbjct: 541 VGS-SPCHLPW--DARLKIAKGIARGLTYVHDKKYV 573


>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 217 IYLDLYFAERTDRPFSYDGRETIIIEAVAEGVTQIVLHSNVDSINAVSVLTEGGAP 384
           + LDL+F E  +R    D     +I  +    T   LH    ++  +SV  +GG P
Sbjct: 248 VTLDLHFIENNNREVQNDADVKNLIREICNVKT---LHLTCSTVEVISVYCKGGLP 300


>At1g48270.1 68414.m05392 G protein coupled receptor-related
           identical to putative G protein coupled receptor
           GI:2104224 from [Arabidopsis thaliana]
          Length = 326

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 527 FIGPSFIVLEYSIYKEYFCPTTRGSFKLIF 438
           F+G +FIVL Y ++KE      + SFKL+F
Sbjct: 31  FVGSAFIVLCYCLFKE----LRKFSFKLVF 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,893
Number of Sequences: 28952
Number of extensions: 310728
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)