Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p11r
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17) 29 0.95
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6) 28 1.7
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_43632| Best HMM Match : EGF (HMM E-Value=0.6) 27 3.9
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011) 27 3.9
SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59) 27 3.9
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0) 26 5.1
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34) 26 6.7
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5) 26 6.7
SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26) 26 6.7
SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10) 26 6.7
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 26 6.7
SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8) 25 8.9
>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
Length = 321
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 59 LEVCRSSVGPRCDSDVRFVTFQRLCSK 139
L C SSV PR D+D R +TF+ C K
Sbjct: 291 LNHCTSSVPPRFDND-RQITFKEACKK 316
>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
Length = 190
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 59 LEVCRSSVGPRCDSDVRFVTFQRLCSK 139
L C SSV PR D+D R +TF C K
Sbjct: 160 LNHCTSSVPPRFDND-RQITFTEACKK 185
>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 59 LEVCRSSVGPRCDSDVRFVTFQRLCSK 139
L C SSV PR D+D R +TF C K
Sbjct: 507 LNHCTSSVPPRFDND-RQITFTEACKK 532
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 LVTCEAPWLRCLSSLCKLNQLASKRSFCY-CSCLL 249
+V C L + C+LN++AS S+C+ C CL+
Sbjct: 87 IVRCHRGKLELACNSCELNEIAS--SYCFECKCLV 119
>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1209
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -1
Query: 269 QFI-FENKSKQEQ*QNERLEASWFNLHKLLKHRSQGAS--QVTKAR 141
QF+ + N++KQ N RLEA + L KL KH A+ +V KA+
Sbjct: 1118 QFVDYFNRAKQNN--NARLEAEFKKLFKLSKHHPSEAAKKRVNKAK 1161
>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -1
Query: 230 QNERLEASWFNLHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESC 51
+NER+ A+W +++ LK ++ + T R++ R SR S +G + T P +
Sbjct: 152 RNERISATWMCVYRSLKQFAKVFGEETGGRMTIRSA-----SRHSIKVGPQETLIPGKGT 206
Query: 50 S-KVKKE*LTNHA 15
+V E LTN++
Sbjct: 207 KCRVPVE-LTNNS 218
>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 139 FRAEALKRDESHVRVTPWANGRPAH 65
FR L +S VR +PWA RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129
>SB_49350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 298 LSGCGNQENFNLFLRIKVNKNNNKMSAWRQAGLTYIN 188
L G G +N LR++ NN + +Q G TY++
Sbjct: 215 LHGFGMSVEYNKILRVEAQIENNVLQRMQQNGGTYLS 251
>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = -2
Query: 262 FLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH 104
F+ + + + + + R +TY N+S+ A+ + + Q+ R E ++ H
Sbjct: 333 FIANRAHLTSRRAHSSRAKSVTYANFSSTEARRAKTTSSQDIRTEQIQASRYH 385
>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 59 LEVCRSSVGPRCDSDVRFVTFQRLCS 136
L C SSV PR D+D R +TF+ C+
Sbjct: 225 LNHCTSSVPPRFDND-RQITFKEACA 249
>SB_43632| Best HMM Match : EGF (HMM E-Value=0.6)
Length = 201
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 157 CEAPWLRCLSSLCKLNQLASKRSFCYCSCLLL 252
CE+ C SSLC ++ ++ C CLLL
Sbjct: 105 CESDIDDCQSSLCVNSKAKAREMMARCYCLLL 136
>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1013
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 139 FRAEALKRDESHVRVTPWANGRPAH 65
F A L +S VR +PWA RPA+
Sbjct: 832 FAAPPLFAPKSRVRASPWACTRPAY 856
>SB_52354| Best HMM Match : EGF (HMM E-Value=0.0011)
Length = 294
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 157 CEAPWLRCLSSLCKLNQLASKRSFCYCSCLLL 252
CE+ C SSLC ++ ++ C CLLL
Sbjct: 105 CESDIDDCQSSLCVNSKAKAREMMARCYCLLL 136
>SB_39666| Best HMM Match : Fe-ADH (HMM E-Value=0.59)
Length = 483
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 139 FRAEALKRDESHVRVTPWANGRPAH 65
F A L +S VR +PWA RPA+
Sbjct: 353 FAAPPLFAPKSRVRASPWACTRPAY 377
>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1260
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 263 IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKAR 141
++EN+ Q Q Q ++L+ NL KLL+ + S + + R
Sbjct: 611 LYENEKTQAQMQVQQLQTETENLRKLLEDERRQKSLLEQTR 651
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 95 HTLGQRTTCTPPESCSKVKKE 33
H GQ TPP+SCS + ++
Sbjct: 1227 HNYGQPPPMTPPDSCSPIPED 1247
>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
Length = 428
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 256 RIKVNKNNNKMSAWRQAGLTYIN-YSNIAAKVLRRSLKQEFRAEALKRDESHVRVTP 89
RIKV + + +A R+ + +S++ K+ ++ K+EF EAL E + V P
Sbjct: 3 RIKVRTSEEQAAAKRKEREKKMKLFSDLDQKINKKREKREFDEEALDLTEQILGVNP 59
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 68 CRSSVGPRCD-SDVRFVTFQRLCSK 139
C+ V PRCD S VR + Q+ SK
Sbjct: 3229 CQPEVAPRCDTSQVRLASTQQCVSK 3253
>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 25.8 bits (54), Expect = 6.7
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +1
Query: 223 SFCYCSCLLLF 255
+FCYC+C++LF
Sbjct: 243 AFCYCTCVVLF 253
>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
Length = 184
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 103 REIRHVSTPLLEILALVTCEAPWLRCLSSLCKLNQLASKRSFCYCSC 243
R R VS L + A+ C WL + +C++ Q +++ C
Sbjct: 41 RVCRFVSRQNLSV-AICQCSVRWLFAVKRVCRIRQSTGRQNLSVAIC 86
>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
Length = 360
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 206 SLPPSAHFVIVLVYFYSQK*IEIFL 280
S+PP++ V ++ FYS IE+FL
Sbjct: 145 SIPPTSEAVPLIGIFYSASMIEVFL 169
>SB_19804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 268 NLFLRIKVNKNNNKMS-AWRQAGLTYINYSNIAAKVLR 158
N+F+ ++N+ S Q+GLTY YS++ A++++
Sbjct: 378 NVFIDKRMNRGTECASFPPLQSGLTYNRYSSVTAEIVK 415
>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
Length = 384
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 206 SLPPSAHFVIVLVYFYSQK*IEIFL 280
S+PP++ V ++ FYS IE+FL
Sbjct: 209 SIPPTSEAVPLIGIFYSASMIEVFL 233
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 32 IPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRL 130
+ SSLW F E+ G RC S +FVT +RL
Sbjct: 339 VHSSLW--FSELFGKRFGTRCRSCDKFVTERRL 369
>SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)
Length = 158
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 53 SFLEVCRSSVGPRCDSDVRFVTFQRL 130
SF+ C SV +CD DV+ V+ QR+
Sbjct: 54 SFVSRCCRSV--KCDPDVKLVSLQRI 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,469,869
Number of Sequences: 59808
Number of extensions: 162460
Number of successful extensions: 486
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -