Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p11r
(302 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri... 64 1e-11
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 27 2.4
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 27 2.4
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 2.4
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 27 2.4
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 27 2.4
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 2.4
At4g30350.1 68417.m04313 heat shock protein-related contains sim... 27 3.2
At3g15380.1 68416.m01950 choline transporter-related contains we... 26 4.2
At1g52080.1 68414.m05875 actin binding protein family contains P... 26 4.2
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 26 5.6
At2g44440.1 68415.m05526 emsy N terminus domain-containing prote... 26 5.6
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera... 25 7.4
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote... 25 9.7
At5g16110.1 68418.m01882 expressed protein hypothetical protein ... 25 9.7
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 25 9.7
At5g02920.1 68418.m00235 F-box family protein low similarity to ... 25 9.7
At1g29355.1 68414.m03589 expressed protein 25 9.7
At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transfera... 25 9.7
At1g17240.1 68414.m02100 leucine-rich repeat family protein cont... 25 9.7
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 25 9.7
>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
identical to ATP synthase epsilon chain, mitochondrial
SP:Q96253 from [Arabidopsis thaliana]
Length = 70
Score = 64.5 bits (150), Expect = 1e-11
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = -2
Query: 238 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 71
+N + WR AG+TYI+YSNI A ++R LK+ +AEAL R++ H ++ WA+G+P
Sbjct: 3 SNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 47 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 130
WNS +C+S VG C SD V RL
Sbjct: 67 WNSTNHICKSWVGVTCTSDGTSVHALRL 94
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 230 QNERLEASWFNLHKLLKH-RSQGASQV 153
QN W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 283 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 116
N+E NLFL +++++ R T+ N A + L QEF + LKR
Sbjct: 536 NEEALNLFLELQLSRE-------RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 118 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 219
+ +PLL I + C + + S +CK+ LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 43 TLEQLSGGVQVVRWP 87
TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 43 TLEQLSGGVQVVRWP 87
TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225
>At4g30350.1 68417.m04313 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 924
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 120 NVTNLTSESHLGPTDDLHTSRKLFQSEEGIVNQPCMK 10
++ T +H G T LH + L S G + Q C+K
Sbjct: 23 SIAEATRRNH-GHTTPLHVAATLLSSSSGYLRQACIK 58
>At3g15380.1 68416.m01950 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 700
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 238 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 116
+N+ + W+Q G I I K +RRS+ RA LKR
Sbjct: 193 SNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNS--RASVLKR 231
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 263 IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQV 153
+F K K+ Q +NE+L+A F K+L SQV
Sbjct: 191 VFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQV 227
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 275 KFQFIFENKSKQEQ*QNERLEASWFNLH 192
+ FI E K+E+ Q E W NLH
Sbjct: 526 RINFIVERGVKEEEKQLPETEFDWLNLH 553
>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 429
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -2
Query: 283 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALK--RDE 110
N+E+ L R+ + ++ WRQ+G + N AA+V+ +L + ++K +
Sbjct: 102 NEEHRELLGRVNSDDTIRRIREWRQSGGMQPSMRN-AAQVVHDTLPSPSVSASMKTHKPN 160
Query: 109 SHVRVTPWANGRPAHLQKAVP 47
+ P+A+ P+ +A P
Sbjct: 161 QPIPSQPFASSSPSFHPQADP 181
>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase; similar
to UDP-glucose glucosyltransferase GI:3928543 from
[Arabidopsis thaliana]
Length = 487
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 43 TLEQLSGGVQVVRWP 87
TLE L+GGV ++ WP
Sbjct: 387 TLESLAGGVPMICWP 401
>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
kinase, putative
Length = 614
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 2 LMIFMHGWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFLL 148
L+ F++ + S WN+ VC + G CD D VT L LL
Sbjct: 37 LLDFLNNIIHPRSLAWNTSSPVCTTWPGVTCDIDGTRVTALHLPGASLL 85
>At5g16110.1 68418.m01882 expressed protein hypothetical protein
T26J14.6 - Arabidopsis thaliana, EMBL:AC011915
Length = 244
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 197 LHKLLKHRSQGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPP 60
+ L H SQ A+ + ++ + +E R + T+GQ + +PP
Sbjct: 108 IRPLRLHMSQAAADLCDSKAGAELLEIIRRKEDNGTIGQLLSSSPP 153
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 106 EIRHVSTPLLEILALVTCEAPWLRCLSSLCKLNQLASKRSFCYCSCLL 249
E R +T LL L CE+P+ CLS L + + SCL+
Sbjct: 68 EKRTNNTKLLLTLLNRNCESPFRECLSKLLQSADSETGEEKQRISCLI 115
>At5g02920.1 68418.m00235 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 345
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 127 PLLEILALVTCEAPWLRCLSSLCKLNQLASKRSFCY 234
P+LE L+L CE+ LS +L +L +R C+
Sbjct: 193 PILESLSLKFCESLKYLDLSKSLRLTRLEIERRSCF 228
>At1g29355.1 68414.m03589 expressed protein
Length = 307
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = -2
Query: 250 KVNKNNNKMSAWRQAGLTYINYSNIAA-----KVLRRSLKQEFRAEALKRDESHVRVTP 89
++N+N + +A + AGL++++ S + LR ++ + + ++ +E+H + P
Sbjct: 198 RMNQNKSPAAASKSAGLSHVSDSQLTVSDPLISSLRLDKEKSWYDQTVEEEENHAQEAP 256
>At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 43 TLEQLSGGVQVVRWP 87
TLE L GGV +V WP
Sbjct: 383 TLESLCGGVPMVCWP 397
>At1g17240.1 68414.m02100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 729
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 298 LSGCGNQENFNLFLRIKVNKNNNKMSA---WRQAGLTYINYSNIAAKVLRRSLKQE 140
LSG E NL +++ +NN +S W L +++Y N+A L + E
Sbjct: 612 LSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSE 667
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 133 LEILALVTCEAPWLR-CLSSLC-KLNQLASKRSFCYCSCLLLFSKI 264
+ +L+ CE + + CL+ K+ S SFC CL LF K+
Sbjct: 148 ISLLSCGMCERRYHQLCLNDEAHKVQSFGSASSFCGPKCLELFEKL 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,500
Number of Sequences: 28952
Number of extensions: 114233
Number of successful extensions: 353
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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