Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p11f
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007293-1|AAP35957.1|   51|Homo sapiens ATP synthase, H+ transp...    52   7e-07
BC105811-1|AAI05812.1|   51|Homo sapiens ATP5E protein protein.        52   7e-07
BC003671-1|AAH03671.1|   51|Homo sapiens ATP synthase, H+ transp...    52   7e-07
BC001690-1|AAH01690.1|   51|Homo sapiens ATP synthase, H+ transp...    52   7e-07
AL591024-1|CAH70632.1|   51|Homo sapiens protein ( Human DNA seq...    52   7e-07
AL109840-12|CAC09372.1|   51|Homo sapiens ATP synthase, H+ trans...    52   7e-07
AF052955-1|AAF72736.1|   51|Homo sapiens F1-ATPase epsilon-subun...    52   7e-07
X03529-1|CAA27230.1|  106|Homo sapiens lambda L-chain C region p...    28   7.2  
M34516-1|AAA36097.1|  144|Homo sapiens omega protein protein.          28   7.2  
AL022324-1|CAI41685.1|  224|Homo sapiens immunoglobulin lambda-l...    28   7.2  
AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.                28   9.5  

>BT007293-1|AAP35957.1|   51|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, epsilon subunit
           protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>BC105811-1|AAI05812.1|   51|Homo sapiens ATP5E protein protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>BC003671-1|AAH03671.1|   51|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, epsilon subunit
           protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>BC001690-1|AAH01690.1|   51|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, epsilon subunit
           protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>AL591024-1|CAH70632.1|   51|Homo sapiens protein ( Human DNA
           sequence from clone RP11-153M24 on chromosome 13
           Contains a novel gene similar to ATP synthase (H+
           transporting, mitochondrialnase, an).
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AKV+R +LK EF+A A K   + V++
Sbjct: 5   WRQAGLSYIRYSQICAKVVRDALKTEFKANAKKTSGNSVKI 45


>AL109840-12|CAC09372.1|   51|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, epsilon subunit
           protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>AF052955-1|AAF72736.1|   51|Homo sapiens F1-ATPase epsilon-subunit
           protein.
          Length = 51

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 86  WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRV 208
           WRQAGL+YI YS I AK +R +LK EF+A A K   S+V++
Sbjct: 5   WRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKI 45


>X03529-1|CAA27230.1|  106|Homo sapiens lambda L-chain C region
           protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 270 FLLHFGTAFWRCAGRPLAQGVTLT*DSSRFNASARNSCFSDL 145
           F L   T  W+  G P+ QGV +T  S + N+    S +  L
Sbjct: 33  FYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSL 74


>M34516-1|AAA36097.1|  144|Homo sapiens omega protein protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 270 FLLHFGTAFWRCAGRPLAQGVTLT*DSSRFNASARNSCFSDL 145
           F L   T  W+  G P+ QGV +T  S + N+    S +  L
Sbjct: 71  FYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSL 112


>AL022324-1|CAI41685.1|  224|Homo sapiens immunoglobulin lambda-like
           polypeptide 3 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 270 FLLHFGTAFWRCAGRPLAQGVTLT*DSSRFNASARNSCFSDL 145
           F L   T  W+  G P+ QGV +T  S + N+    S +  L
Sbjct: 151 FYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSL 192


>AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 121 KHRSQGASQVTKARISSRGVET*RISRQSHTLGQ-RTTCTPPESC 252
           K+ S G + V  + +SSR       S Q+    Q  T C+P ESC
Sbjct: 585 KNNSDGKTAVVGSNLSSRPASPNSSSGQASVGNQTNTACSPEESC 629


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,033,034
Number of Sequences: 237096
Number of extensions: 942489
Number of successful extensions: 1988
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1988
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)