Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10p11f
(351 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri... 64 2e-11
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 29 0.87
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 27 3.5
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 27 3.5
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 3.5
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 27 3.5
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 27 3.5
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 3.5
At3g15380.1 68416.m01950 choline transporter-related contains we... 26 6.1
At1g52080.1 68414.m05875 actin binding protein family contains P... 26 6.1
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 26 8.1
At3g54260.1 68416.m05997 expressed protein various predicted pro... 26 8.1
At2g44440.1 68415.m05526 emsy N terminus domain-containing prote... 26 8.1
>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
identical to ATP synthase epsilon chain, mitochondrial
SP:Q96253 from [Arabidopsis thaliana]
Length = 70
Score = 64.5 bits (150), Expect = 2e-11
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = +2
Query: 65 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 232
+N + WR AG+TYI+YSNI A ++R LK+ +AEAL R++ H ++ WA+G+P
Sbjct: 3 SNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 232 CTPPESCSKVKKE*LTNMHENHQLLIY 312
C PP SCSK+ + +T + HQ L++
Sbjct: 743 CPPPYSCSKLDND-VTEIRNEHQTLVF 768
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 256 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 173
WNS +C+S VG C SD V RL
Sbjct: 67 WNSTNHICKSWVGVTCTSDGTSVHALRL 94
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 73 QNERLEASWFNLHKLLKH-RSQGASQV 150
QN W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 20 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 187
N+E NLFL +++++ R T+ N A + L QEF + LKR
Sbjct: 536 NEEALNLFLELQLSRE-------RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 185 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 84
+ +PLL I + C + + S +CK+ LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 260 TLEQLSGGVQVVRWP 216
TLE LSGGV +V WP
Sbjct: 381 TLESLSGGVPMVCWP 395
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 260 TLEQLSGGVQVVRWP 216
TLE LSGGV +V WP
Sbjct: 211 TLESLSGGVPMVCWP 225
>At3g15380.1 68416.m01950 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 700
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 65 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 187
+N+ + W+Q G I I K +RRS+ RA LKR
Sbjct: 193 SNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNS--RASVLKR 231
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 40 IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQV 150
+F K K+ Q +NE+L+A F K+L SQV
Sbjct: 191 VFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQV 227
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 28 KFQFIFENKSKQEQ*QNERLEASWFNLH 111
+ FI E K+E+ Q E W NLH
Sbjct: 526 RINFIVERGVKEEEKQLPETEFDWLNLH 553
>At3g54260.1 68416.m05997 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 379
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 325 CTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTF 182
C IL K+++ F WL N+ L+ R RCD V TF
Sbjct: 14 CLILGKVVLSQFDELWLVGDDDPLNA-LQTRRERREERCDYSVGKWTF 60
>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 429
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 20 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALK--RDE 193
N+E+ L R+ + ++ WRQ+G + N AA+V+ +L + ++K +
Sbjct: 102 NEEHRELLGRVNSDDTIRRIREWRQSGGMQPSMRN-AAQVVHDTLPSPSVSASMKTHKPN 160
Query: 194 SHVRVTPWANGRPAHLQKAVP 256
+ P+A+ P+ +A P
Sbjct: 161 QPIPSQPFASSSPSFHPQADP 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,398,456
Number of Sequences: 28952
Number of extensions: 135234
Number of successful extensions: 392
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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