Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p07f
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35490.1 68414.m04403 bZIP family transcription factor              29   1.7  
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family...    29   2.2  
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    29   2.9  
At5g23490.1 68418.m02756 expressed protein                             27   6.7  
At3g08670.1 68416.m01007 expressed protein                             27   8.8  
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t...    27   8.8  
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t...    27   8.8  
At1g08800.1 68414.m00979 expressed protein weak similarity to SP...    27   8.8  
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ...    27   8.8  

>At1g35490.1 68414.m04403 bZIP family transcription factor
          Length = 300

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 359 LSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMW 237
           LS P  P +++GH  S +      +      + NH +G  W
Sbjct: 61  LSEPASPKINKGHRRSASDTAAYLNSALMPSKENHVAGSSW 101


>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
           protein Common family member: At2g32840 [Arabidopsis
           thaliana]
          Length = 332

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -1

Query: 224 PRHTASYDPGAVEVSALLSAL-ELHRHRDPD--HLMVVGLYGYEGMGSSRQRKQRQYIKT 54
           PR + +YDPG  E   + S L +  R R+P    L  +GL    G+G  R   Q    + 
Sbjct: 125 PRPSFTYDPGPYEQRQMESLLQQFIRERNPQIRPLPRLGLGSPVGLGPIRASPQFLQPRV 184

Query: 53  SHPRITV**TARNSTSK 3
           + P  ++  T+RN  ++
Sbjct: 185 APPPTSILDTSRNRKAR 201


>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = -1

Query: 386 AETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMWMSA*PRHTAS 207
           A TQ    S S+  PP  S  +G    +   +  G       NHH      +   +   +
Sbjct: 144 AATQQSGKSSSSSAPPRPSSSNGTRKHEPQSNNTGTHHSSTGNHHHSSKPSAKQSKPVPA 203

Query: 206 YDPGAVEVSALLSALELHR 150
           YD    E+   + +LE  R
Sbjct: 204 YDEKITELKLYIDSLEKER 222


>At5g23490.1 68418.m02756 expressed protein
          Length = 729

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
 Frame = -1

Query: 428 VSVNSESTSEELSGAETQLKRASLSAPGP--------PAVSRGHGASVAQQGGSAHGGAT 273
           VS   ES SEE     T +KRA +   GP        P   R  G   A    S HG   
Sbjct: 134 VSNRFESHSEETISNGT-VKRA-IDGTGPSQFDSSISPMRMRLEGEHDAHFSSSTHGSMP 191

Query: 272 VGQSNHHSGKMW 237
           VG+ N HSG  W
Sbjct: 192 VGEVN-HSGNAW 202


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 159 LKSAEEGA-DFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAH 335
           L SAE G  D+D      G+  G  +H  LAA  I  +   +S   AS LS ++S +  H
Sbjct: 88  LSSAEGGKNDYDWLLTPPGTPLGNDSHSSLAAPKIASSARASSASKASRLSVSQSESGYH 147

Query: 336 CWR 344
             R
Sbjct: 148 SSR 150


>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 351

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 284 HVRSLPAEPHSLRDRGSLLEDQERSRTHASIG 379
           H +SLPA  H+L D     ED   SR H+  G
Sbjct: 51  HAQSLPASQHNLEDTDETCED---SRYHSDQG 79


>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 468

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 284 HVRSLPAEPHSLRDRGSLLEDQERSRTHASIG 379
           H +SLPA  H+L D     ED   SR H+  G
Sbjct: 168 HAQSLPASQHNLEDTDETCED---SRYHSDQG 196


>At1g08800.1 68414.m00979 expressed protein weak similarity to
           SP|Q02455 Myosin-like protein MLP1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF04576: Protein of
           unknown function, DUF593
          Length = 1113

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -1

Query: 404 SEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKM 240
           S++    ET L+ +SLS   P  V+    A++  +  S +  +   ++N +SG++
Sbjct: 723 SDKKEMKETSLRISSLSEMAPRDVTSHTEAALESESSSFNSMSVAAETNQYSGEL 777


>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
           identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
           thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 267

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +2

Query: 272 RSHLHVRSLPAEPH----SLRDRGSLLEDQERSRTHAS 373
           RSH+ +  LP++P     S+ D G +L+D+E S T +S
Sbjct: 25  RSHMLIHPLPSQPESYSSSMADPGFVLQDRE-SETESS 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,428
Number of Sequences: 28952
Number of extensions: 194688
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)