Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p04r
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46360| Best HMM Match : EGF (HMM E-Value=0)                         31   0.30 
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          31   0.30 
SB_29914| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)            27   6.4  

>SB_46360| Best HMM Match : EGF (HMM E-Value=0)
          Length = 352

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +2

Query: 119 DCLPFPCSCLSTCDQITDALSNLRQLT*LGWSKFNASIFHKNI*FWPRLSDGSINKSRHL 298
           DC P PC    TC    DA+S    L   G++  N SI       +P L++G+    R+ 
Sbjct: 51  DCTPQPCKQGGTC---VDAVSGYTCLCMPGFTGINCSIEMDECGSYPCLNNGTCVDGRNR 107

Query: 299 SDCT 310
             CT
Sbjct: 108 VTCT 111


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +2

Query: 119  DCLPFPCSCLSTCDQITDALSNLRQLT*LGWSKFNASIFHKNI*FWPRLSDGSINKSRHL 298
            DC P PC    TC    DA+S    L   G++  N SI       +P L++G+    R+ 
Sbjct: 864  DCTPQPCKQGGTC---VDAVSGYTCLCMPGFTGINCSIEMDECGSYPCLNNGTCVDGRNR 920

Query: 299  SDCT 310
              CT
Sbjct: 921  VTCT 924


>SB_29914| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
          Length = 184

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 217 LAPPKLSELPQIRQGIGNLI---TSAKTGAWKRQTVKEAT 107
           +  P  S  P++R  +GNL+   T  + G W  +T+ E +
Sbjct: 1   MTTPDESRQPEVRSAMGNLLRPKTKIRLGTWNVRTMYETS 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,344
Number of Sequences: 59808
Number of extensions: 189956
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)