Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10p03f
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30180.1 68417.m04291 expressed protein                             29   2.1  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.1  
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    29   2.7  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    29   3.6  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    29   3.6  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   8.4  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   8.4  

>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 44  SSQQY*WRWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRK 163
           S+Q++ W         S SN TTT+ S S G R+L+ P K
Sbjct: 62  SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 243 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 142
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 222 PPSCWTCDRTDEWQNFHLRSFLTDQHPLRDRRSLLEDQESPGSSVHPRS 368
           PPSC   DR+         SFL++ H    + +++ D  +P  S H +S
Sbjct: 168 PPSCGNLDRSSAVPTLDTSSFLSNHH----QENIITDLGAPTGSFHHQS 212


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 95  PSNSTTTSRSVSPGPRVLDAPRKPL 169
           PS+STTT+R+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 95  PSNSTTTSRSVSPGPRVLDAPRKPL 169
           PS+STTT+R+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 180 YQDCGWFCRQRWCSPPSCWTCDR 248
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 558 LGCRLRKDLRCCFGSQQPTKTPXEPP 635
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.129    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,552
Number of Sequences: 28952
Number of extensions: 230329
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)