Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o22r
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 542 DPNVRYEALLAVQKLMVHNWEYL 474
           DP   Y  LL   ++  H W+Y+
Sbjct: 69  DPKAMYTVLLEFVQIDPHRWKYV 91


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 150 FDKYYLLCEPQNC--TCISSHLALILFM 73
           F++YY +C+P      C  +  +LI  +
Sbjct: 166 FERYYAICKPLKAGYICTKTRASLICLL 193


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 150 FDKYYLLCEPQNC--TCISSHLALILFM 73
           F++YY +C+P      C  +  +LI  +
Sbjct: 166 FERYYAICKPLKAGYICTKTRASLICLL 193


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 665 PVVLAVACYDIGEYVRHYPRGKHIIE 588
           PV+L  +     EY+ + P  K+II+
Sbjct: 419 PVILWTSTLTQKEYLENLPSDKYIIQ 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,596
Number of Sequences: 336
Number of extensions: 3730
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)