Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o22r
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    81   2e-16
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   2.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.4  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   3.4  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   6.0  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 35/67 (52%), Positives = 48/67 (71%)
 Frame = -2

Query: 695 LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 516
           L H+++ + D   LAVAC+D+G Y+R YP G+ +I + G KQR+M L+SH DP VR+EAL
Sbjct: 373 LFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEAL 432

Query: 515 LAVQKLM 495
             VQ LM
Sbjct: 433 STVQLLM 439


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 522 FVTYIRIVVTQEVHDTLFTTKLFDDVFAA 608
           ++TY+R +   E  D  F  +LFDDV  A
Sbjct: 256 YMTYVRSLEFDEEPDYAFLQELFDDVLRA 284


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 486 VVNHKFLHGEQGFVTYIRIVVTQEVHDTLFTTK-LFDDVFAARIVAHIFSDVIASD 650
           VV   ++H  + F+  I+  +TQ ++  + T+K LF  V  ++I      +++A D
Sbjct: 317 VVKELYVHVSRRFMLRIKAAITQMIYKKVLTSKTLFVAVDGSKINLDYVYNLLAKD 372


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 692 VHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVR--YEA 519
           ++L   + D  +L  AC  +  Y    P    ++++ GGK +   LL     N R  +  
Sbjct: 65  IYLSTPAFDKTILTSACITVRSYYPSQPPIVQLLDEKGGKHKYTSLLLQLWKNERSVFNI 124

Query: 518 LLAVQKLMVHNWE 480
              VQ L+  ++E
Sbjct: 125 YRLVQALIKQDFE 137


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/83 (26%), Positives = 30/83 (36%)
 Frame = -2

Query: 695 LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 516
           LV LL  S    +   A   +G  V        II   G       LLSH   N+R EA 
Sbjct: 295 LVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEAC 353

Query: 515 LAVQKLMVHNWEYLGKQLEKEQI 447
             +  +   N + +   +E   I
Sbjct: 354 WTISNITAGNTQQIQAIIESNLI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,871
Number of Sequences: 5004
Number of extensions: 53580
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)