Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21r
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.6  
SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       29   4.8  
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)                    28   6.3  
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.4  

>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 531 ALRNLQSYFLINLHYDIPYNFMIGN--DGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNY 358
           AL   +S+FLI+L   IP+ FM+ +  DG   +G   G  G      +    G G  GNY
Sbjct: 84  ALNYFKSWFLIDLLSAIPFEFMVDHRKDGVSNQGNYEGYEGCLRCDDDSYGCGYGCDGNY 143


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 661  FKGVVASQMGQQYAAHNSFRSYTTGHYPAHRHTRLFHIRRLRGGI 527
            F G  A+    +Y  HN  R+Y  GH+ A  +T      RL  G+
Sbjct: 2237 FSGKYAANTYSKYGKHNQCRNYKGGHW-ASEYTGSLQFFRLNDGM 2280


>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 653 CCGKPDGPTIRSAQQLSILYDWS-LSSTPSHQTVSHSS 543
           C G  D   ++  QQL  LY+ + + +TPSH T  HSS
Sbjct: 115 CPGSHDDEVLQEMQQL--LYEAADIYTTPSHDTSGHSS 150


>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
          Length = 477

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 365 PTNPRPSVHLLYMKVWAPTMPQPRPSYTLP 454
           P  P PS HL+      P +P PRP Y  P
Sbjct: 253 PPGPHPSAHLMD---GPPAIPPPRPRYDSP 279


>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 365 PTNPRPSVHLLYMKVWAPTMPQPRPSYTLP 454
           P  P PS HL+      P +P PRP Y  P
Sbjct: 253 PPGPHPSAHLMD---GPPAIPPPRPRYDSP 279


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 381  GLGFVGNYDRHTQVSKL 331
            G  F GNYDRHT V+++
Sbjct: 1275 GKAFAGNYDRHTVVTRV 1291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,170,365
Number of Sequences: 59808
Number of extensions: 540549
Number of successful extensions: 1344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)