Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21r
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 613 NSFRSYTTGHYPAHRHTRLFHIR 545
           N +++    HY +H+H R  H+R
Sbjct: 113 NQYKNQNNNHYTSHQHLRT-HLR 134


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/22 (31%), Positives = 9/22 (40%)
 Frame = -1

Query: 699 EDGDRTAPHEWDISRVLWQARW 634
           + G      EW+  R LW   W
Sbjct: 564 DSGSINTVAEWEPPRALWPTEW 585


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 74  LHIPSSHLSLSVIVFF 27
           LH+PS H+ L  IV +
Sbjct: 95  LHVPSEHIWLPDIVLY 110


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 77  MLHIPSSHLSLSVIVFF 27
           MLH+PS H+    IV +
Sbjct: 102 MLHVPSDHIWRPDIVLY 118


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 77  MLHIPSSHLSLSVIVFF 27
           MLH+PS H+    IV +
Sbjct: 102 MLHVPSDHIWRPDIVLY 118


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 77  MLHIPSSHLSLSVIVFF 27
           MLH+PS H+    IV +
Sbjct: 98  MLHVPSDHIWRPDIVLY 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,531
Number of Sequences: 438
Number of extensions: 4778
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)