Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21r
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    30   1.7  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    30   1.7  
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   5.2  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    28   6.8  
At4g28540.1 68417.m04083 casein kinase, putative similar to case...    28   6.8  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    28   6.8  

>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 106 INTICLRYHSVGNFTVDVPEAISV 177
           +NT+CLRY  V  F VDV E++++
Sbjct: 618 VNTLCLRYPLVHFFKVDVEESLAL 641


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 106 INTICLRYHSVGNFTVDVPEAISV 177
           INT+CLRY  V  F VDV E++++
Sbjct: 627 INTLCLRYPLVHFFMVDVEESMAL 650


>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = -1

Query: 537 VAALRNLQSYFLINLHYDIPYNFMIGNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNY 358
           ++++ +++S+       D+P N +I N G          + A  F+ +   + L F  N+
Sbjct: 89  LSSMASVRSFASEYQSLDLPLNLLINNAG----------IMACPFLLSSDNIELQFATNH 138

Query: 357 DRHTQVSKLQIERMKLLLEKGVREG 283
             H  ++ L +ERMK    +  REG
Sbjct: 139 LGHFLLTNLLLERMKKTASESNREG 163


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 615 CAAYCWPIWLATTPLK 662
           CA+ C  +WLA TPLK
Sbjct: 447 CASLCLILWLAATPLK 462


>At4g28540.1 68417.m04083 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
           contains protein kinase domain, Pfam:PF00069
          Length = 479

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 626 IRSAQQLSILYDWSLSSTPSHQTVSHSSLAWRH 528
           IR   Q   ++DW+    P     SHSS   RH
Sbjct: 282 IREGYQFDYVFDWTALKHPQSSARSHSSTHERH 314


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 366 GNYDRHTQVSKLQIERMKLLLEKGVREG 283
           GN D++ Q S  ++ER  L LE  +R+G
Sbjct: 279 GNADKNRQASDQKLERGNLALENSLRKG 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,386
Number of Sequences: 28952
Number of extensions: 370272
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)