Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21f
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0700 - 5413026-5413122,5413226-5413356,5413840-5413905,541...    31   0.62 
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617...    31   1.1  
01_01_0098 + 744582-745380,746107-746130,746500-747569                 31   1.1  
04_03_0096 + 11158108-11159083,11159116-11159744                       29   4.4  
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807...    28   5.8  
04_04_0440 - 25219961-25221529                                         28   5.8  
01_06_1411 + 37127098-37128279                                         28   5.8  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    28   5.8  

>01_01_0700 -
           5413026-5413122,5413226-5413356,5413840-5413905,
           5413986-5414037,5414496-5414581,5414682-5414851,
           5414974-5415057,5415302-5415372,5415461-5415621
          Length = 305

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 99  RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 269
           RR V  E    +  A+V++ +D + +      D+ S+ T     TEG + + +  S  +K
Sbjct: 82  RRAVSLEEEYDAAGAEVVLGDDEDASKQEEEEDIPSMDTLDIGKTEGIKSIPSYFSAGKK 141

Query: 270 SEKDKDIP 293
           +E+++DIP
Sbjct: 142 AEEEEDIP 149


>10_08_0918 -
           21560635-21560795,21560847-21560935,21561696-21561760,
           21561841-21561892,21562271-21562356,21562457-21562626,
           21562748-21562831,21563284-21563354,21563461-21563621
          Length = 312

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 99  RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 269
           RR V  E    +  A+V++ +D + +      D+ S+ T     TEG   + +  S  +K
Sbjct: 82  RRAVSLEEEYDAAGAEVVLGDDEDASKPEEEEDIPSMDTLDIGKTEGINSIPSYFSAGKK 141

Query: 270 SEKDKDIP 293
           +E+++DIP
Sbjct: 142 AEEEEDIP 149


>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 333 RVIRALSIAAFVILLTVVAFMLYFTIMANFSSE 431
           +VI A S+AAFV +  VVA +LY ++   ++ E
Sbjct: 271 KVIAATSVAAFVAVSLVVATVLYLSLKQRYNEE 303


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 475 CCGKPDGPTIRSAQQLSILYDWSLSSTPSHQTVSHSSLA 591
           CC   D   I +++  +I Y  ++S  PS+    H SLA
Sbjct: 266 CCHNVDNVAIDASELTTIAYRGAVSDDPSYTLSMHGSLA 304


>07_03_0736 -
           21079880-21080185,21080231-21080429,21080531-21080768,
           21080888-21081098,21081181-21081320,21081400-21081537,
           21086208-21087036
          Length = 686

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 461 GYFKGVVASQMGQ--QYAAHNSFRSYTTG 541
           G F G+VA+ +     YAAHNS R Y +G
Sbjct: 154 GRFNGMVAALVNATADYAAHNSTRRYASG 182


>04_04_0440 - 25219961-25221529
          Length = 522

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 129 STTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQKS 272
           S + D+++  D   A  +G  +   +Q ++        D+ TNASNAQ S
Sbjct: 449 SISLDIVLERDAGGAIENGGQEAGQVQITELTDQMAAMDLPTNASNAQSS 498


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 512 HNSFRSYTTGHYPAHRHTRLFH 577
           H+ F  Y  GH+P H H  L H
Sbjct: 100 HHQFPVYRRGHHPDHDHDPLLH 121


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 72   CFIFWTKMPRRGVHTESGPSTTADVIMLNDRNVATVS 182
            C+ FW    RR  HTE   S+ AD +    R    +S
Sbjct: 1272 CYCFWRNKARRKQHTEMEKSSDADDLPFRVRKSPALS 1308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,142,209
Number of Sequences: 37544
Number of extensions: 382794
Number of successful extensions: 1195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)