Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21f
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)                       32   0.48 
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.4  
SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)                     29   4.5  
SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       29   4.5  
SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)                   29   4.5  
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_45612| Best HMM Match : zf-C2H2 (HMM E-Value=0.0065)                28   7.8  
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_43564| Best HMM Match : zf-C2H2 (HMM E-Value=1.2)                   28   7.8  

>SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)
          Length = 1108

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 129  STTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIP 293
            STTADV  L  R+V++VS DV +++    ++  G  DV T       S    D+P
Sbjct: 910  STTADVPTLEGRSVSSVSSDVPTLEGRSDSSASG--DVPT-LEGRSDSSASSDVP 961


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 467  FKGVVASQMGQQYAAHNSFRSYTTGHYPAHRHTRLFHIRRLRGGI 601
            F G  A+    +Y  HN  R+Y  GH+ A  +T      RL  G+
Sbjct: 2237 FSGKYAANTYSKYGKHNQCRNYKGGHW-ASEYTGSLQFFRLNDGM 2280


>SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 231 PRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRALSIAAFVILLTVVAFM 395
           PR+ E++ + A     D DI   RY+ KV       IRAL I   +IL  +  F+
Sbjct: 248 PREYESDGAFAVVCLLDLDILHQRYVSKVA-----YIRALVIVVIIILSNICCFL 297


>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 475 CCGKPDGPTIRSAQQLSILYDWS-LSSTPSHQTVSHSS 585
           C G  D   ++  QQL  LY+ + + +TPSH T  HSS
Sbjct: 115 CPGSHDDEVLQEMQQL--LYEAADIYTTPSHDTSGHSS 150


>SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)
          Length = 233

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 120 SGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKD 281
           + P T+A      +    +  GD+  + +SQ N  +G R+V TNAS+  KSE D
Sbjct: 115 AAPRTSAQTQTSLELTTVSAVGDLPRV-SSQVN-DKGERNVITNASSEIKSEPD 166


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 LHNLMQPKALEMLKPMLRTHKNPKKTKIYRFRATCE 312
           LH +++P    ML+PMLR    P    + +++  C+
Sbjct: 413 LHPMLRPMLRPMLRPMLRPMLRPMLRPMLQYKLWCQ 448


>SB_45612| Best HMM Match : zf-C2H2 (HMM E-Value=0.0065)
          Length = 373

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 111 HTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRD-VETNASNAQKSEKDKD 287
           H E  P+  A     ND  +      +AS ++      EG R+ V     +A KS K K+
Sbjct: 61  HAERQPAPRAKARWTNDEMILVARKQIASEKSRCSAVVEGMREAVPHRTFDAVKSLKTKN 120

Query: 288 IPFSRYLRKV 317
             ++R L ++
Sbjct: 121 RNYTRILEQI 130


>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 231 PRDVETN-ASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRAL 350
           P D E N A N +++EK  D P ++  ++VVK     I A+
Sbjct: 478 PMDTEENKAENKEENEKKADAPKNKKKKQVVKNIDLPIEAV 518


>SB_43564| Best HMM Match : zf-C2H2 (HMM E-Value=1.2)
          Length = 474

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 137 CRCHHVE*QKCSNC 178
           C+CHH   Q C NC
Sbjct: 96  CKCHHTHDQLCDNC 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,490,571
Number of Sequences: 59808
Number of extensions: 446204
Number of successful extensions: 1318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)