Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o21f
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    30   1.2  
At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    29   2.1  
At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    29   3.6  
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    28   4.8  
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    28   6.4  
At4g28540.1 68417.m04083 casein kinase, putative similar to case...    28   6.4  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    28   6.4  
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ...    27   8.4  

>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 46  YFKDHFVSFVSFFGLRCLDGAYIQRAVPAQLQMSSC*MTE 165
           YFKDH+   + F  L CL    I RA P  L M  C + E
Sbjct: 448 YFKDHYGYEIQFKNLPCLQ---ISRARPCYLPMELCMICE 484


>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
 Frame = -1

Query: 374 KYYERSYRQRSN-HPARCLHYFSQVARKRYI-----FVFFGFLCVRSIGFNISRAF-GCI 216
           K +ERSYR+ S  H A   HY  +  R R       +  F  L       ++S+   GC 
Sbjct: 71  KRWERSYRKLSPAHKALVPHYPMKFQRLRRCISANSYFIFNMLQAFEPPIDLSQELDGCE 130

Query: 215 KL*SLNRRDVSRHSCYISVIQHDDICSCAGTALCMY-APSRHLSPKNETKLTK*SLKYME 39
                +  D + H  Y    +HD  C  A T  C Y   S+H+     T ++   L+  E
Sbjct: 131 D----SNLDCAPHERYTLDERHDSSCQPALTNSCTYKEESKHIRDP-ITGVSIEELQRKE 185

Query: 38  ADDVSPR 18
           A D SP+
Sbjct: 186 AHDHSPK 192


>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 171 ATVSGDVASIQTSQFNATEGPRDVETNAS 257
           A V+   AS+QTS F+ T GP DV+   S
Sbjct: 112 AAVNSLSASMQTSGFSVTSGPMDVDVVTS 140


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 4/145 (2%)
 Frame = -2

Query: 499 LAHLACHNTLEISHS*GAVRSPSSEEKLAMIVKYSMKATTVKSITNAAIDNALITLLDVF 320
           L +LAC   L +SH+    + P++  +L  +    +   ++  +       + I+L+ + 
Sbjct: 64  LKNLACLVVLNVSHN-KLSQLPAAIGELTAMKSLDVSFNSISELPEQI--GSAISLVKLD 120

Query: 319 TTFRR*REN----GISLSFSDFCAFEALVSTSRGPSVALNCEV*IDATSPDTVATFLSFN 152
            +  R +E     G  L  SD  A    +S+   P   +NC             T LS N
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSL--PEDMVNCSKLSKLDVEGNKLTALSEN 178

Query: 151 MMTSAVVLGPLSVCTPRLGILVQKM 77
            + S  +L  L+ C   LG+L Q +
Sbjct: 179 HIASWTMLAELNACKNMLGVLPQNI 203


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 513 CAAYCWPIWLATTPLK 466
           CA+ C  +WLA TPLK
Sbjct: 447 CASLCLILWLAATPLK 462


>At4g28540.1 68417.m04083 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
           contains protein kinase domain, Pfam:PF00069
          Length = 479

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 502 IRSAQQLSILYDWSLSSTPSHQTVSHSSLAWRH 600
           IR   Q   ++DW+    P     SHSS   RH
Sbjct: 282 IREGYQFDYVFDWTALKHPQSSARSHSSTHERH 314


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 234 RDVETNASNAQKSEKDKDIPFSRYLRKVVKTSSRV 338
           R++ +  SN  +S  D DIP   YL+ +VK + R+
Sbjct: 346 REIASATSNNIRSLSDSDIPKLPYLQAIVKETLRL 380


>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
           protein (ADOF2) identical to Dof zinc finger protein
           ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
           to cDNA adof2 mRNA for Dof zinc finger protein
           GI:3608262; contains Pfam profile PF02701: Dof domain,
           zinc finger
          Length = 204

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 54  RSFCEFCFIFWTK-MPRRGVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEG 230
           R FC+ C  +WTK    R V    G    A       R+ ++ S   +   +SQ   T+ 
Sbjct: 53  RHFCKSCRRYWTKGGALRNVPVGGGSRKNA-----TKRSTSSSSSASSPSNSSQNKKTKN 107

Query: 231 PRDVETNASNAQKSEKD 281
           P D + +  N+QK + D
Sbjct: 108 P-DPDPDPRNSQKPDLD 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,788
Number of Sequences: 28952
Number of extensions: 305157
Number of successful extensions: 1004
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)