Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o20r
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    30   0.38 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.87 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   2.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   3.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.6  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 393 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 536
           S  TT+ S   +    S ST   PQTFP+SG +   ++    +   GW
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGW 504


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -3

Query: 582 CTPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPW 403
           CT    + +  S+ +S P+T ++P     + + P P  S     S+ +  S+   +T   
Sbjct: 229 CTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST----SSTDTNSSPLPTTSTS 284

Query: 402 CPPTVSLRPPARKARLPST 346
           C  + S+ PP   +  P T
Sbjct: 285 CTTSTSI-PPTGNSTTPVT 302


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 580 HPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 476
           HP+ T G VS N +  P   +  V      +LP S
Sbjct: 669 HPTGTFGNVSGNYNTSPAQSVGDVTAEEGSELPSS 703


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 567 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 397
           P  ++AST +S+  +S  PW       A + P P    A  +S   L  N  +S  PW  
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465

Query: 396 PT 391
           PT
Sbjct: 466 PT 467


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 616 PSLVTETSAVRLHPSDTIGLVSI----NRDVQPTDFISPVALSASED 488
           P L + TS +RL PSDT   + +    N ++    + +P+  S S D
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSD 143


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = -2

Query: 640 YGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPTDFISPVALSASEDLPE-SGNVC 464
           Y L+  + P L ++    R+  +  IG +  N  V   +  SPV    +EDLP  +G+  
Sbjct: 40  YNLLGRVVPYLKSKNWDTRVAAAKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTE 99

Query: 463 GFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDVGTALVSDDVQVAVLLAGAD 284
               +  E G   S     VV ++  L + SE  +  +  + T   S +++  ++  G D
Sbjct: 100 EKPFIKTEEGAPASSQSQVVVSSN--LTSNSEVSKLEEERLSTRSHSQEIK-PIVDFGPD 156

Query: 283 ENSA 272
           E +A
Sbjct: 157 EETA 160


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 354 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 527
           EV+PSS++   RP   +   S ++   P   ++S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,884
Number of Sequences: 5004
Number of extensions: 43782
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)