Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o20r
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 36 0.035
At3g29080.1 68416.m03641 hypothetical protein 30 1.3
At4g24680.1 68417.m03533 expressed protein 30 1.7
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 30 1.7
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 2.3
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 29 3.0
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 29 3.0
At1g74010.1 68414.m08571 strictosidine synthase family protein s... 29 3.0
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 3.0
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 29 4.0
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 29 4.0
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 28 5.3
At3g28790.1 68416.m03593 expressed protein 28 5.3
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 5.3
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 5.3
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 7.0
At1g34000.2 68414.m04216 light stress-responsive one-helix prote... 28 7.0
At1g34000.1 68414.m04215 light stress-responsive one-helix prote... 28 7.0
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 7.0
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 9.3
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 35.5 bits (78), Expect = 0.035
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = -3
Query: 618 TRPWSRRLAQSVCTPRIPLVS-SASTGMSNPLTSSL-PWLCLPARTYPNPEMSAALAKST 445
T P S+ +++S R P+ S SA+T +NP S + P PA+ P P + AL+++
Sbjct: 303 TLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKPMPTPSKNPALSRAA 362
Query: 444 ANLESN*AASTCPWCP---PTVSLR-PPARKARLPSTML 340
+ + PW P P SL PP + LP L
Sbjct: 363 SP-----TVRSRPWKPSDMPGFSLETPPNLRTTLPERPL 396
>At3g29080.1 68416.m03641 hypothetical protein
Length = 445
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 348 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 497
+L +WPSSL + T + + S S GSP TSP+ + P RS++
Sbjct: 160 FLTIWPSSLQTLACDTFRLTRFTVKSSVSFGSP-TSPETKLIPSLRRSTI 208
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 29.9 bits (64), Expect = 1.7
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +3
Query: 399 GTTDTSKQLSCSPGSPS-TSPKPQTFPDSGRSSLAD--KATGEMKSVGWTSLLMLTRPMV 569
GT+ S + PGSPS S +P + R S AD KA SV W S +RP
Sbjct: 63 GTSSLSPRTESGPGSPSHLSNRPSSGGSVTRPSTADSNKAHDSSSSVAWDS---NSRPSS 119
Query: 570 SEGCRRTALVSVT-RDGLITTTRP*RTQMKR 659
+ G + SV + TRP +Q+ R
Sbjct: 120 ASGVFPSNQPSVALQRPHSADTRPGSSQLSR 150
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 497 GRQSHGRDEVSGLDIPVDADETNGIRGVQTDCASLRDQGRVNYHHQTITDPDETDILEAA 676
G+Q H + + G++ D+ + + V C LR +Y + I +PD+ +
Sbjct: 206 GKQIHAQILIGGVEC--DSKMNSSLVNVYAKCGDLR---MASYMLEQIREPDDHSLSALI 260
Query: 677 SGAEDPARVNE 709
SG + RVNE
Sbjct: 261 SGYANCGRVNE 271
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 423 LSCSP-GSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALV 599
LS +P SPS SP P P S S++AD + + W + + PM +E + A +
Sbjct: 69 LSSNPLTSPSLSPPPSPSPRSSGSNIAD------EELMWRAAMAPRSPMKNETHPKVAFM 122
Query: 600 SVTR 611
+TR
Sbjct: 123 FLTR 126
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 354 EVWPSSLVASRRPSAGTTDTSKQLSCSPG-SPSTSPKPQTFPDSGRSSLADKATGEMKSV 530
E+ SS+V + + T T + C SPS SP P P S LA + E++ +
Sbjct: 504 ELVESSMVGAIESRSSTHATIEDPVCEQSPSPSPSPSPSPSPSPSPSVLASECCSEVERI 563
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/109 (25%), Positives = 38/109 (34%)
Frame = +3
Query: 369 SLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLL 548
++ SR GTT C G ++ PKP P SG L G + SV +
Sbjct: 39 NMCCSRWGYCGTTKAYCGTGCQSGPCNSKPKPTPTP-SGSGGLNAGPRGTIASVITPAFF 97
Query: 549 MLTRPMVSEGCRRTALVSVTRDGLITTTRP*RTQMKRTSWRQLAALRTQ 695
V GC A TR I + R++AA+ Q
Sbjct: 98 NSIMSKVGSGC--PAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQ 144
>At1g74010.1 68414.m08571 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088
Length = 325
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -2
Query: 406 VVPADGLLEATSEEGQTSKYDVGTALVSDDVQVAVLLAGADENSAGTFVPVAEYIE 239
V+ A GL +A+ G+ KYD T V++ ++ AG +S G+FV V+E+I+
Sbjct: 169 VLIAVGLKDAS---GKLFKYDPATKAVTELMEGLSGAAGCAVSSDGSFVLVSEFIK 221
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -3
Query: 567 PLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTA 442
P S+S ++P+TSS P L R+ P+P S+A A STA
Sbjct: 29 PETPSSSHFSASPVTSSSPLL----RSSPSPSTSSAAASSTA 66
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 465 QTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSEGCRRTALVS 602
Q FP +G+ S K+TG M + + L R ++ G R T +S
Sbjct: 836 QKFPKNGKLSTVSKSTGNMLTRSISPLPPAKRESIATGIRLTRSIS 881
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 621 LTRPWSRRLAQSVCT--PRIPLVSSASTGMSNPL 526
+T P A+SVC P+IP+++ A TG N L
Sbjct: 95 ITPPEMAATARSVCAAAPKIPIIADADTGGGNAL 128
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 393 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEM 521
S TT + +S S G+P+TSP P++ +S + T M
Sbjct: 130 SGATTPGASPVSPSAGAPTTSPSAAKSPETSATSPSSDETPSM 172
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +3
Query: 381 SRRPSAGTT--DTSKQLSCSP-GSPSTSPKPQTFPDSGRSS 494
+ + S+G T DT+ S SP GSPS SP P T D SS
Sbjct: 355 TNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTDGKASS 395
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.3 bits (60), Expect = 5.3
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Frame = -2
Query: 643 RYGLVVVINPSLVTETSAVRLHPSDTIGLVSINRDVQPT-----DFISPVALSASEDLPE 479
RY + +N +++ D + + + D +P+ D IS S ++D+ E
Sbjct: 875 RYSTIDEVNAAILQLEEREHASSGDKVS-IERHSDTKPSNKSSSDVISSNGKSTAKDIRE 933
Query: 478 SGNVCGFGEVDGEPGEQLSCFDVSVVPAD-GLLEATSEEGQTSKYDVGTALVSDD 317
+G G E D + G D D G E SE G YD G SDD
Sbjct: 934 NGEAHG-EESDSDSGSGSVVRDGQNEELDDGNHERGSESGDGDDYDDGDGPGSDD 987
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 363 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKAT 512
PSS +S PS+ + + LS SP SP P P + P S S + +T
Sbjct: 90 PSSSPSSAPPSSLSPSSPPPLSLSPSSP-PPPPPSSSPLSSLSPSSSSST 138
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 496 SEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSK 350
+E+ P G G + +GE GE+ + +++ G LE S+ +TSK
Sbjct: 999 NEETPRLGENGGCNQQNGESGEESTSVTENII--GGKLEQKSKNSETSK 1045
>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 145
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 384 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 476
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
(OHP2) contains similarity to photosystem II 22 kDa
protein GI:6006279 from [Arabidopsis thaliana]
Length = 172
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 384 RRPSAGTTDTSKQLSCSPGSPSTSPKPQTFP 476
RRPSA T Q P PS+SP P P
Sbjct: 51 RRPSAPPTLREPQKPVPPSQPSSSPPPSPPP 81
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 621 LTRPWSRRLAQSVCTPRIPLVSSASTGMSNPLTSSLP 511
++RP S R++ P+ P SSAS + P T + P
Sbjct: 29 VSRPTSFRISAVQTDPKTPAASSASAATTTPATLTKP 65
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 387 RPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDS--GRSSLADKATGEMKSVGWTSL 545
RP GT+ LS SP PS+SP P P S G ++ D ++ G+ ++
Sbjct: 1123 RPVFGTSHQHMSLS-SPPLPSSSPPPPPAPPSQQGECAMPDSYLNGFENGGYRNV 1176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,883,085
Number of Sequences: 28952
Number of extensions: 268833
Number of successful extensions: 1060
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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