Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o14r
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.58
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.76
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 28 1.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.1
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 7.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 7.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 7.1
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.4
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 9.4
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.4
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -3
Query: 388 DLEFDFDYR--VKVMNIGPTGRIRGSLSQFVINVDLIIDFNNDEIHLQELYLTD----VG 227
D+ +Y+ +K N+GP G I SL+ FV D ++ + L D +
Sbjct: 58 DIRDTINYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIE 117
Query: 226 VIRVSLSGNILYDWLVT 176
+ + S SG+I+ D L +
Sbjct: 118 IFQWSASGSIICDTLAS 134
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -3
Query: 328 IRGSLSQFVINVDLIIDFNNDEIHLQE-LYLTDVGVIRVSLSGNILYDWLVTPLANVFV 155
++G++ +FVI +L F+N+ + + + L + +++ S SG L T L N+ +
Sbjct: 295 VKGAVQEFVIKAELTFSFSNESLASSDSISLAAIALMKTS-SGVFAESELFTELINLLI 352
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 0.76
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 403 KFKFTDLEFDFDYRVKVMNIGPTGRIRGSLSQFVINVDLIIDFNNDEIHLQ 251
KF+FT L D + K +N+GP+ ++ SL ++ D+ + NDE Q
Sbjct: 2588 KFQFTSL---LDIK-KWLNLGPSEKLFSSLFSIYVDNDIPLKLFNDECKAQ 2634
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/95 (23%), Positives = 42/95 (44%)
Frame = +2
Query: 71 DIDISNSGTSNAFNSGFNESHDDIIEKTHKHICQRSHQPIVENVSRKAHSNNTNVS*IKL 250
D DI+++G ++ F +SH + HK + P++ + A + + I +
Sbjct: 32 DSDIAHAGIRPELDNAFYDSHGEAATPKHKPHAGPNAAPLLS--ASNADTTGLDSHYIIV 89
Query: 251 LKMNLIVVEVDDEINIYNELRQRTPDATSRSDVHY 355
L+ +L E N +E+ Q D S+ D +Y
Sbjct: 90 LQPDLSEQEFQAHTNWVSEMHQM--DIASQEDEYY 122
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 77 QCQLETSNPRSRSIEQLINV 18
+C LE SNPR S+++L+ +
Sbjct: 1181 ECSLELSNPRLFSLQKLVEI 1200
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/87 (20%), Positives = 34/87 (39%)
Frame = -3
Query: 289 LIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPLANVFVRLFDNVIMGFVETTV 110
+ D+N ++ + + L G IL+ W+VTP N F + + + +
Sbjct: 317 MTFDWNQISAYILSPLMAPADALMNILLGVILFFWIVTPALN-FTNTWYGDYLPISSSGI 375
Query: 109 KSIAGSAIADVNVNLKQVIRDLEALNN 29
G++ + K DL+A N
Sbjct: 376 IDHFGNSYNVTRILTKDATFDLDAYQN 402
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.4 bits (53), Expect = 7.1
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -3
Query: 295 VDLIIDFNNDEIHLQELYLTDVGVIRVSLSGN-ILYDWLVTPLANVFVRLFDNVIMGFVE 119
++ I+D DEI+L+EL L + GV+ S N L ++L P V +L D I+ E
Sbjct: 17 IEAILDKPEDEINLKEL-LEENGVLDECKSHNPKLLEYLCKP--EVLSQLID-YILEVDE 72
Query: 118 TTVKSIAG 95
T + S G
Sbjct: 73 TEIPSADG 80
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -3
Query: 259 HLQELYLTDVGVIRVSLSGNILYDWLVTPLANVFVRLFDNVIMGFVETTVKSIAGSAIAD 80
H+++L L V SL I + L+ L F +FD I+ + + G
Sbjct: 394 HVEDLSLPCFAVKEDSLK-RITQETLLGLLDGKFKDIFDKCIIIDCRFEYEYLGGHISTA 452
Query: 79 VNVNLKQVIRD 47
VN+N KQ I D
Sbjct: 453 VNLNTKQAIVD 463
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 LFQVDI-DISNSGTSNAFNSGFNESHDDIIEKTHKHICQR 175
+ VD+ D+S G AFN + +D+I +T + + ++
Sbjct: 21 ILDVDVGDLSPKGVDAAFNYALDVDYDEIDPETERRLVRK 60
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 DIDISNSG-TSNAFNSGFNESHDDIIEKTHKHICQRSHQPIVENVSRKAHSNN 226
D + SNS +SNA S NE+ D + + K ++S + E + + N+
Sbjct: 528 DFNSSNSRPSSNALKSDANENTDSSLPPSKKEFIEKSLHKLSEPLHDDSRQNS 580
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 331 RIRGSLSQFVINVDLIIDFNNDEIHLQELYLTDVGVIRVSLSG 203
R+ GS S + DL+ +FN +E L T VG + V+L+G
Sbjct: 671 RMDGSTS-IALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTG 712
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 137 DIIEKTHKHICQRSHQPIVENVSRKAHSNNTNVS*IKLLKMNLIVVEVDDEINIYN 304
D++++TH + QR + N SRK +N + + + K I E N N
Sbjct: 101 DLVKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHRETKRRNINAEASTSDNCNN 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,810
Number of Sequences: 5004
Number of extensions: 51832
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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