Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10o14r
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 30 1.8
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 2.4
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 29 2.4
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660... 29 3.2
07_01_0055 + 424097-427129 28 5.6
01_01_0205 + 1764034-1767601,1767934-1767944 28 7.4
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 27 9.7
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 27 9.7
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 487 GKMSGLVNVARSGDQLVHYFAKMLRAQAKFKFTDLEFDFDYRVKVMNIGPTGRIRGSLSQ 308
GK ++N G Q +H +++ K +++ DFDY K+ + G G S+
Sbjct: 480 GKRFKIINGIARGLQYLHEDSQLKIVHRDLKASNILLDFDYSPKISDFGLAKIFGGDQSE 539
Query: 307 FVIN 296
V N
Sbjct: 540 DVTN 543
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -3
Query: 526 VLITYRASLGLTNGKMSGLVNVARSGDQLVHYFAKMLRAQAKFKFTDLEFDFDYRVKVMN 347
+L ++ L GK ++N G Q +H +++ K +++ DFDY K+ +
Sbjct: 449 ILFDIDKNIELDWGKRFKIINGIAQGLQYLHEDSRLKIVHRDLKASNILLDFDYNPKISD 508
Query: 346 IG 341
G
Sbjct: 509 FG 510
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 233 RW-CYSSEPFWKHSLRLVGDSFGKCV 159
RW C + P KH+ R+V D GKC+
Sbjct: 461 RWACVNFSPKRKHAARVVSDIIGKCI 486
>10_02_0197 +
6596197-6596402,6596766-6596828,6599679-6599795,
6600311-6600545,6600771-6600929,6601159-6601310,
6602511-6602571
Length = 330
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 193 YDWLVTPLANVFVRLFDNVIMGFVETTVKSIAGSAIADVNVNL 65
Y + PL+ VF + D+V+MG + TV SI G+A+ V + L
Sbjct: 283 YPPMFNPLSVVFTVVLDSVLMG-DDVTVGSIIGTAMVIVGLYL 324
>07_01_0055 + 424097-427129
Length = 1010
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = -3
Query: 343 GPTGRIRGSLSQFVINVDLIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPLAN 164
GP R+ S F++++DL + N + L L D G ++ SLS I + L L
Sbjct: 308 GPIARVNFSSMPFLVSIDLATNHLNGSLPLS---LADCGDLK-SLS--IAKNSLTGQLPE 361
Query: 163 VFVRLFDNVIMGFVETTVKSIAGS 92
+ RL ++ T+++I+G+
Sbjct: 362 EYGRLGSLSVLSLSNNTMRNISGA 385
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 68 VDIDISNSGTSNAFNSGFNESHDDII--EKTHKHICQRSHQPIVENVS 205
V +D+S ++ + FNES D+II ++ H+ + +VEN+S
Sbjct: 159 VSLDLSKRYVNDNSDISFNESDDEIIFTGDSYNHLQESRLMSLVENLS 206
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 68 VDIDISNSGTSNAFNSGFNESHDDI 142
+DI++++SG NA + G + HD +
Sbjct: 617 LDIELASSGIFNALSDGLRDKHDKL 641
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 53 DYLFQVDIDISNSGTSNAFNSGFNESHDDI--IEKTH---KHICQRSHQPIVENVSRKAH 217
D L +DI I+N+GT+ F N S +DI I T+ +C R ++++ + H
Sbjct: 237 DELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQHQQKGGH 296
Query: 218 SNN 226
N
Sbjct: 297 VFN 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,173
Number of Sequences: 37544
Number of extensions: 296351
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -