Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14r
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          28   5.7  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 28   7.5  
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)             28   7.5  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)                   27   9.9  
SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 311 RQRTPDATSRSDVHYFHAIIE-IELKIGKFK-FGLGTQHL 424
           R RTP+ TSR D H    I   ++ K+  F   GL TQ +
Sbjct: 246 RPRTPEVTSRQDTHGISGITNTVKRKLSAFSLLGLQTQDI 285


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  AEPAMLLTVVSTNPMMTLSKRRTNTFAK 173
           A+P    T  ST+P  TLSK +T  F K
Sbjct: 375 ADPVSTATASSTSPATTLSKPKTQNFHK 402


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  DYLFQVDIDISNSGTSNAFNSGFNESHDD 139
           D L ++ +DI    TSNA N+  + SH+D
Sbjct: 504 DQLERLCLDIDQGNTSNAHNNAEDSSHED 532


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 218 SNNTNVS*IKLLKMNLIVVEVDDEINIYNELRQRTPDATSRSDVHYFHAIIEI 376
           SNN+N++  K   +NL V E+  + N+ + + Q T  A  RS +H    ++E+
Sbjct: 599 SNNSNLTPTKYENLNLNVTELHIDNNMRSRMNQST-KAYFRSVLHIKDNLMEV 650


>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 80  ISNSGTSNAFNSGF-NESHDDIIEKTH-KHIC--QRSHQPIVENVSRKAHSNNTNVS 238
           IS +   N  N+   +  H   I +TH +HI    R+H   + N SR  H N TN S
Sbjct: 212 ISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNITNTS 268


>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 80  ISNSGTSNAFNSGF-NESHDDIIEKTH-KHIC--QRSHQPIVENVSRKAHSNNTNVS 238
           IS +   N  N+   +  H   I +TH +HI    R+H   + N SR  H N TN S
Sbjct: 145 ISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNTSRTNHYNITNTS 201


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 226 VIRVSLSGNILYDWLVTPLANVFVRLFDNVIMGFVETTVK 107
           ++R       L+  ++TP+  VF+R FDN I   V++ +K
Sbjct: 270 ILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLK 309


>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
          Length = 881

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 265 EIHLQ-ELYLTDVGVIRVSLSGNILYDWLVTPLANVFVRLFDNVIMGFV 122
           ++HL   L ++ VGV+ V  SGNI+  + V  LA   +   DN + G V
Sbjct: 538 KVHLMFVLEVSVVGVLLVDSSGNIVVTYPVRSLAFTGLCSDDNKVFGIV 586


>SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = +2

Query: 65  QVDIDISNSGTSNAFNSGFNESHDDIIEKTHK-------HICQRSHQPIVENVSRKAHSN 223
           +++I I    T +  N G + SH D+ E+ HK       H+ + S + I      K H N
Sbjct: 89  RMEITIHAEKTVHDINDGDDTSHHDLNEEYHKKVDTSCLHLKKESDECIDNKEIDKMHEN 148

Query: 224 NTNVS 238
             N++
Sbjct: 149 ENNLN 153


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 491 SKTQTRSIGNKDWSNFKSLFDVGNT*RIKVMFYHERNQCINHAVDVCVDI 640
           SK+ +RS   + WS FK         R +V+ Y ERN  + + V+  VD+
Sbjct: 135 SKSTSRSPSKERWSKFK---------RERVVAYEERNIAVEYRVERGVDV 175


>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 346 CSLLSRDNRNRTQDR*I*IWPGHATSLRSNAPTDLLNEP 462
           CS L++D+ N    R +    GH T+ R ++P  L ++P
Sbjct: 320 CSALNKDSGNTKSTRRLGSVRGHPTNFRCSSPALLSSKP 358


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 42   SRSRITCFKLTLTSAIAEPAMLLTVVSTNPMMTLSKRRTNTFAKGVTNQS*RMFP---ER 212
            S S  T   ++LTS    P  L T  ST P     KRR++T  +  ++ S    P   +R
Sbjct: 1087 SLSSKTSGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVSSGPSKKQR 1146

Query: 213  LTRITPTSV 239
              R +PT V
Sbjct: 1147 RGRESPTEV 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,527,147
Number of Sequences: 59808
Number of extensions: 379252
Number of successful extensions: 1024
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)