Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14r
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    31   0.53 
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    28   5.0  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    28   5.0  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    28   5.0  
AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 244  YLTDVGVIRVSLSGNILYDWLVTPLANVFVRLFDNVIMGFVETTVKSIAGSAIADVNVNL 65
            Y  D GV+ +     +LY W   P    F   F++   GF+  T+  I    I  + V +
Sbjct: 1231 YTHDFGVMLILTLSFLLYGWTALPFTYWFQFFFESAPKGFMMVTMYHILTGMIGSIAVPI 1290

Query: 64   KQVIRDLEA 38
                  L+A
Sbjct: 1291 ISQTSSLDA 1299


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +2

Query: 89  SGTSNAFNSGFNESHDDIIEKTHK--HIC----QRSHQPIVENVSRKAHSNNTNVS*IKL 250
           SG  N FN  FN     +IE+ H+  H C     + ++P  + V +K+ +   +   I L
Sbjct: 186 SGLCNEFNKTFNYQKKHVIERKHENLHYCYALMHKGYKPFGQEVFKKSSTCEGHYCFISL 245

Query: 251 LKMNLIVVEVDDEIN 295
               +++   D + N
Sbjct: 246 TTSEIVLESADFKHN 260


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 77  DISNSGTSNAFNSGFNESHDDIIEKTHKHICQRSHQPIV----ENVSRKAHSNNTN 232
           D++N   + + +S  NES+D+ I+     +  + HQP++    E +  ++  NN N
Sbjct: 714 DLNNFTVNCSLDSNSNESNDEPIKTEKTQLLLKEHQPVISKRQETLKTESSFNNFN 769


>Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical
           protein F38B2.3 protein.
          Length = 485

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 113 SGFNESHDDIIEKTHKHICQRSH 181
           SGF  S D +I +T  H+C R+H
Sbjct: 111 SGFKMSFDRLINETSNHLCDRTH 133


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 488 ISKTQTRSIGNKDWSNFKSLFDVGNT*RIKVMFYHERNQCINHAVD 625
           + K QT++I  + W+   +   V +T +I V+FY++  +  + A+D
Sbjct: 520 LRKCQTQTIAPRSWNRISARIKVQSTEKIFVLFYNDAMEPKSIAID 565


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 295 VDLIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPL-ANVFVRL 149
           V  I DF   E  L EL   D+ VI+ S+ GN L+   +TP  A VF +L
Sbjct: 190 VGAIGDFEPQE--LDELLHRDLKVIQDSIKGNFLFGDKITPADATVFGQL 237


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 215 HSNNTNVS*IKLLKMNLIVVEVDDEINIYNELRQRTPDATSRSDV--HYF 358
           H N+ ++  I+  K N  +V+    INI+N + +R+ DA   + +  +YF
Sbjct: 65  HPNDNSLICIRFKKTNRFLVDDPQTINIFNTIIRRSFDAMKLTQIGRNYF 114


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 295 VDLIIDFNNDEIHLQELYLTDVGVIRVSLSGNILYDWLVTPL-ANVFVRL 149
           V  I DF   E  L EL   D+ VI+ S+ GN L+   +TP  A VF +L
Sbjct: 190 VGAIGDFEPQE--LDELLHRDLKVIQDSIKGNFLFGDKITPADATVFGQL 237


>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 616 MIDTLVPFMIKHDLDPLSIPDIEETFEVRPVLITYRASLGLTNG 485
           ++ TL+ F+I   L  L  P++++TFE       Y  SLG TNG
Sbjct: 239 VVHTLLHFLIC--LAGLGAPELDQTFEEATDSSDYVESLGDTNG 280


>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 110 NSGFNESHDDIIEKTHKHICQRSHQPIVENVSRKAHSN 223
           N   N S + I E +     Q+ HQP++  VS   HSN
Sbjct: 346 NGAGNSSSNTITEMSQYQ--QQHHQPVIRAVSNGTHSN 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,874
Number of Sequences: 27780
Number of extensions: 282308
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)