Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   0.56 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.74 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   5.2  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.2  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
            zf-fungal binuclear cluster type |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 178  ARNAVTRNWEGLGLTADINAYVDSMIDTLVPF 273
            A+N+  + W GL  + D+  Y +S ID+LV +
Sbjct: 933  AKNSDLQQWNGLWPSDDLRNYQESTIDSLVAY 964


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 463  KFKFTDLEFDFDYRVKVMNIGPTGRIRGSLSQFVINVDLIIDFNNDEIHLQ 615
            KF+FT L    D + K +N+GP+ ++  SL    ++ D+ +   NDE   Q
Sbjct: 2588 KFQFTSL---LDIK-KWLNLGPSEKLFSSLFSIYVDNDIPLKLFNDECKAQ 2634


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 88  MYKYSAVLILALLVATEGHDFVAQSQFHSQARNAVTRNWEGLGLTADINAYVDSMIDTLV 267
           MY + +   LALL+AT  +  VA  + HS +R    RNW+        NA    +I +  
Sbjct: 1   MY-FQSFYFLALLLATAVYGQVASPELHSLSR----RNWKKPPPFPSTNASYAPVIRSCD 55

Query: 268 PFMIK-HDLDPLSIPDIEETF 327
              I  + L    +PD+E  F
Sbjct: 56  SSEIMVNSLPRGELPDLENDF 76


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 478 DLEFDFDYR--VKVMNIGPTGRIRGSLSQFVINVDLII 585
           D+    +Y+  +K  N+GP G I  SL+ FV   D ++
Sbjct: 58  DIRDTINYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVL 95


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 259 YQSCCRRMR*YLLLDQGLPSYE*RHSWL 176
           Y SC  RM   L LDQG  S + R  W+
Sbjct: 503 YDSCRVRMEHVLQLDQGYLSRDNRELWI 530


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 216 TKAFPVTSDGIPGLRMELALGNKIMALC 133
           T  FP +S  + GLR E  LG  ++  C
Sbjct: 449 TDIFPTSSIKVQGLRKETGLGTLVLNKC 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,375
Number of Sequences: 5004
Number of extensions: 51935
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)