Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)                   28   5.5  
SB_19756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 555 RQRTPDATSRSDVHYFHAIIE-IELKIGKFK-FGLGTQHL 442
           R RTP+ TSR D H    I   ++ K+  F   GL TQ +
Sbjct: 246 RPRTPEVTSRQDTHGISGITNTVKRKLSAFSLLGLQTQDI 285


>SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 207 RPWSNSRYQRIRRQHD 254
           R WS SRY R++R HD
Sbjct: 8   RQWSQSRYLRLQRSHD 23


>SB_19756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 76  VTRNMYKYSAVLILALLVATEGH 144
           + RN+Y+YS +LIL + +A   H
Sbjct: 24  ILRNLYRYSCLLILRVYLAVRKH 46


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 375 SKTQTRSIGNKDWSNFKSLFDVGNT*RIKVMFYHERNQCINHAVDVCVDI 226
           SK+ +RS   + WS FK         R +V+ Y ERN  + + V+  VD+
Sbjct: 135 SKSTSRSPSKERWSKFK---------RERVVAYEERNIAVEYRVERGVDV 175


>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 520 CSLLSRDNRNRTQDR*I*IWPGHATSLRSNAPTDLLNEP 404
           CS L++D+ N    R +    GH T+ R ++P  L ++P
Sbjct: 320 CSALNKDSGNTKSTRRLGSVRGHPTNFRCSSPALLSSKP 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,594
Number of Sequences: 59808
Number of extensions: 398352
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)