Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81560-4|CAB04546.1|   94|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 378 ISKTQTRSIGNKDWSNFKSLFDVGNT*RIKVMFYHERNQCINHAVD 241
           + K QT++I  + W+   +   V +T +I V+FY++  +  + A+D
Sbjct: 520 LRKCQTQTIAPRSWNRISARIKVQSTEKIFVLFYNDAMEPKSIAID 565


>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 250 MIDTLVPFMIKHDLDPLSIPDIEETFEVRPVLITYRASLGLTNG 381
           ++ TL+ F+I   L  L  P++++TFE       Y  SLG TNG
Sbjct: 239 VVHTLLHFLIC--LAGLGAPELDQTFEEATDSSDYVESLGDTNG 280


>Z81560-4|CAB04546.1|   94|Caenorhabditis elegans Hypothetical
           protein K02E2.4 protein.
          Length = 94

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  CWCYKKHVQVFGCSNTGAVGCNRGP*FCCPEPI 167
           C  Y+K + + GC +T  +   R    CCPEP+
Sbjct: 56  CQNYEK-ILMEGCGSTVMLTMQRTKLICCPEPV 87


>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 156 PEPIPFSSQECRHS*LGRPWSNSRYQRIRRQH 251
           P PIPFS+       LG P +N  Y     QH
Sbjct: 179 PVPIPFSNAALMQRWLGHPLTNPAYLNAMFQH 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,122
Number of Sequences: 27780
Number of extensions: 294575
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)