Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o14f
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18160.1 68417.m02698 outward rectifying potassium channel, p...    30   1.5  
At4g14010.1 68417.m02166 rapid alkalinization factor (RALF) fami...    28   6.0  
At5g64240.2 68418.m08070 latex-abundant family protein (AMC3) / ...    27   7.9  
At5g64240.1 68418.m08069 latex-abundant family protein (AMC3) / ...    27   7.9  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    27   7.9  

>At4g18160.1 68417.m02698 outward rectifying potassium channel,
           putative (KCO6) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 436

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 573 NIYNELRQRTPDATSRSDVHYFHAIIEIELKIGKFKFGLGTQH 445
           ++++ +RQ+ P  TSRS V    A++ + L +G   + L   H
Sbjct: 132 DLHHPIRQKDPTETSRSVVRQAFALLVVYLSLGVLIYWLNRDH 174


>At4g14010.1 68417.m02166 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 117

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 378 WQNERLSKRGSFRRSVGALLRKDVACPG 461
           W ++RL++  + + S GAL R   AC G
Sbjct: 57  WSSQRLTEEQAHKLSYGALRRNQPACDG 84


>At5g64240.2 68418.m08070 latex-abundant family protein (AMC3) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 362

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 331 VRPVLITYRASLGLTNGKMSGLVNVARSGDQLVHYFAKMLR 453
           V+P   T + S   T  ++  LV++AR  ++++H F ++LR
Sbjct: 17  VQPDARTVQCSTCHTVTQLYSLVDIARGANRIIHGFQQLLR 57


>At5g64240.1 68418.m08069 latex-abundant family protein (AMC3) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 305

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 331 VRPVLITYRASLGLTNGKMSGLVNVARSGDQLVHYFAKMLR 453
           V+P   T + S   T  ++  LV++AR  ++++H F ++LR
Sbjct: 17  VQPDARTVQCSTCHTVTQLYSLVDIARGANRIIHGFQQLLR 57


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 585 DDEINIYNELRQRTPDATSRSDVHYFHAIIEI 490
           D+  N+YNEL +R P A  R    Y H I EI
Sbjct: 361 DERCNLYNEL-ERQPKAAPRKS--YIHGIKEI 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,841
Number of Sequences: 28952
Number of extensions: 270529
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)