Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10o13r
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 81  SDDHRSHRGWAFNNNDRFGSDNGLFNNNDW 170
           SD+ +        +N+R+ ++NG  +NN W
Sbjct: 359 SDEQQWRNNQPSTSNNRWHNNNGNNSNNHW 388


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 545 QVATPVIIPAMEVSLWTLTEISAALESPVTN 453
           Q ATP   P    S W+  +    + SP  N
Sbjct: 292 QQATPYSAPGPTYSTWSTVQTPTTVMSPTIN 322


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 396 RRTRSDFNLCFHP 358
           R  R ++N+CF P
Sbjct: 395 RNNRDEYNVCFRP 407


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
 Frame = -1

Query: 588  GAQRGRHRRPDW-TKP 544
            GA    H  PDW TKP
Sbjct: 1024 GASSTEHMHPDWTTKP 1039


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 420 QRDHGRHVRRTRSDFNLCFHPCW 352
           + +  RH+   R+   L FH  W
Sbjct: 398 RHNFNRHLNSNRAPLGLHFHASW 420


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 420 QRDHGRHVRRTRSDFNLCFHPCW 352
           + +  RH+   R+   L FH  W
Sbjct: 405 RHNFNRHLNSNRAPLGLHFHASW 427


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -1

Query: 405 RHVRRTRSDFNLCFHPCW 352
           RH    R+   L FH  W
Sbjct: 411 RHYEENRAPLGLYFHAAW 428


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,423
Number of Sequences: 336
Number of extensions: 2003
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)